MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-34-P3b

Family name MIR-34 (all species)
Seed GGCAGUG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-449b
Paralogues Ami-Mir-34-P1  Ami-Mir-34-P2a  Ami-Mir-34-P2b  Ami-Mir-34-P3a  Ami-Mir-34-P3c  Ami-Mir-34-P3d 
Orthologues Aae-Mir-34  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Hsa-Mir-34-P3b  Isc-Mir-34  Lch-Mir-34-P3b  Lgi-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mml-Mir-34-P3b  Mmu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ovu-Mir-34  Pbv-Mir-34-P3b  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3b  Sha-Mir-34-P3b  Sko-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Xbo-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017712138.1: 29165493-29165553 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-34-P3b)
Mir-34-P3d NW_017712138.1: 29164110-29164168 [-] UCSC
Mir-34-P3c NW_017712138.1: 29165345-29165403 [-] UCSC
Mir-34-P3b NW_017712138.1: 29165493-29165553 [-] UCSC
Mir-34-P3a NW_017712138.1: 29165972-29166036 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUUGCUUGAGUAGCGCUCCCUGUGUCUGGUAGGCAGUGUACUGUUAGCUGGCUGCUUUGUGUGAAUCUAGCAGUCGCUACUGCACUGUCAACAGCUGCAGGGGCAGCUCACUGUGUAUUUU
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Structure
        10          20        30        40        50        60  
CUUGCUUGAGUAGCGCU--|      U   GUA         CUGU    U      UUUGUG 
                   CCCUGUG CUG   GGCAGUGUA    UAGC GGCUGC      U
                   GGGACGU GAC   CUGUCACGU    AUCG CUGACG      G
UUUUAUGUGUCACUCGACG^      C   AA-         C---    -      AUCUAA 
 .       110       100        90         80            70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Ami-Mir-34-P3b_5p

mirBase accessionMIMAT0038282
Sequence
0- AGGCAGUGUACUGUUAGCUGGCUGC -25
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Star sequence

Ami-Mir-34-P3b_3p* (predicted)

mirBase accessionNone
Sequence
40- CAGUCGCUACUGCACUGUCAA -61
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