MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-34-P2a

Family name MIR-34 (all species)
Seed GGCAGUG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-34b
Paralogues Ami-Mir-34-P1  Ami-Mir-34-P2b  Ami-Mir-34-P3a  Ami-Mir-34-P3b  Ami-Mir-34-P3c  Ami-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P2a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2a  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2a  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P2a  Cmi-Mir-34-P2a  Cpi-Mir-34-P2a  Cpo-Mir-34-P2a  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2a  Dpu-Mir-34  Dre-Mir-34-P2a  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2a  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2a  Gga-Mir-34-P2a  Gja-Mir-34-P2a  Hsa-Mir-34-P2a  Isc-Mir-34  Lch-Mir-34-P2a  Lgi-Mir-34  Loc-Mir-34-P2a  Mdo-Mir-34-P2a  Mml-Mir-34-P2a  Mmu-Mir-34-P2a  Mun-Mir-34-P2a  Npo-Mir-34  Oan-Mir-34-P2a  Obi-Mir-34  Ocu-Mir-34-P2a  Ovu-Mir-34  Pbv-Mir-34-P2a  Pfl-Mir-34  Pmi-Mir-34  Rno-Mir-34-P2a  Sha-Mir-34-P2a  Sko-Mir-34  Spt-Mir-34-P2a  Spu-Mir-34  Sto-Mir-34-P2a  Tca-Mir-34  Tgu-Mir-34-P2a  Xbo-Mir-34  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017710534.1: 1302497-1302555 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-34-P2a)
Mir-34-P2b NW_017710534.1: 1301780-1301834 [-] UCSC
Mir-34-P2a NW_017710534.1: 1302497-1302555 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUCCCGUCACCGAAGUAGUGUUUGGUUUGUAGGCAGUGUAGUUAGCUGAUUGUGUCAGUCCCUUGGCAAUCACUAACUUCACUGCCAUCAAAACAAGGCACAGAAUUCCUUGCUUUCCG
Get precursor sequence
Structure
        10         20         30        40        50         
CUCCCGUCACCGAAGUA-      GG-|   UA       U      C       GUCAG 
                  GUGUUU   UUUG  GGCAGUG AGUUAG UGAUUGU     U
                  CACGGA   AAAC  CCGUCAC UCAAUC ACUAACG     C
GCCUUUCGUUCCUUAAGA      ACA^   UA       U      -       GUUCC 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Ami-Mir-34-P2a_5p

mirBase accessionMIMAT0038097
Sequence
0- AGGCAGUGUAGUUAGCUGAUUGU -23
Get sequence
Star sequence

Ami-Mir-34-P2a_3p*

mirBase accessionMIMAT0038098
Sequence
37- AAUCACUAACUUCACUGCCAUC -59
Get sequence