Mir-34-P2a1b

MirGeneDB ID

Xla-Mir-34-P2a1b

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-34b

Paralogues

Xla-Mir-34-P1a Xla-Mir-34-P1b Xla-Mir-34-P2a1a Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xla-Mir-34-P2c1 Xla-Mir-34-P2c2 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2

Orthologues

Aae-Mir-34 Aca-Mir-34-P2a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2a Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2a Cin-Mir-34 Cja-Mir-34-P2a Cli-Mir-34-P2a Cmi-Mir-34-P2a Cpi-Mir-34-P2a Cpo-Mir-34-P2a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2a Dpu-Mir-34 Dre-Mir-34-P2a Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2a Eca-Mir-34-P2a Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2a Gga-Mir-34-P2a Gja-Mir-34-P2a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2a Isc-Mir-34 Laf-Mir-34-P2a Lch-Mir-34-P2a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2a Mdo-Mir-34-P2a Mgi-Mir-34 Mml-Mir-34-P2a Mmr-Mir-34-P2a Mmu-Mir-34-P2a Mom-Mir-34 Mun-Mir-34-P2a Neu-Mir-34-P2a-v1 Neu-Mir-34-P2a-v2 Npo-Mir-34 Oan-Mir-34-P2a Obi-Mir-34 Ocu-Mir-34-P2a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2a Pau-Mir-34 Pbv-Mir-34-P2a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2a Rph-Mir-34 Sha-Mir-34-P2a Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2a Spu-Mir-34 Sto-Mir-34-P2a Tca-Mir-34 Tgu-Mir-34-P2a Tur-Mir-34 War-Mir-34 Xtr-Mir-34-P2a1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030737.1: 49890675-49890736 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2a1b)

Mir-34-P2a1b NC_030737.1: 49890675-49890736 [-] UCSC Ensembl
Mir-34-P2c2 NC_030737.1: 49890676-49890736 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUACAUCUGUCCAAACUGUGUUAGGUUUUCAGGCAGUGUAGUUAGCUGAUUGUGUUAUAUCAAAUGUGCAAUCACUAACUAAACUGCCAUCAAAACUUAACAUGAAAGUGCCGCAUCGAUAC

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Structure

        10          20        30         40        50        60
UUACAUCUGUCCAAACU--            CA-|     G       C       GUUAUA 
                   GUGUUAGGUUUU   GGCAGU UAGUUAG UGAUUGU      U
                   UACAAUUCAAAA   CCGUCA AUCAAUC ACUAACG      C
CAUAGCUACGCCGUGAAAG            CUA^     A       -       UGUAAA 
120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Em

Mature sequence

Xla-Mir-34-P2a1b_5p

mirBase accession

MIMAT0046586

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGU -23

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Star sequence

Xla-Mir-34-P2a1b_3p*

mirBase accession

MIMAT0046587

Sequence

40- AUCACUAACUAAACUGCCAUCA -62

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