MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-34-P2b2a

Family name MIR-34 (all species)
Seed GGCAGUG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-34-P1a  Xla-Mir-34-P1b  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b  Xla-Mir-34-P2b1a  Xla-Mir-34-P2b1b  Xla-Mir-34-P2b2b  Xla-Mir-34-P2c1  Xla-Mir-34-P2c2  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2  Xla-Mir-34-P3d1  Xla-Mir-34-P3d2 
Orthologues Aae-Mir-34  Aca-Mir-34-P2b  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P2b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2b  Cin-Mir-34  Cja-Mir-34-P2b  Cli-Mir-34-P2b  Cmi-Mir-34-P2b  Cpi-Mir-34-P2b  Cpo-Mir-34-P2b  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2b  Dpu-Mir-34  Dre-Mir-34-P2b  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2b  Eca-Mir-34-P2b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2b  Gga-Mir-34-P2b  Gja-Mir-34-P2b  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P2b  Isc-Mir-34  Laf-Mir-34-P2b  Lch-Mir-34-P2b  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P2b  Mdo-Mir-34-P2b  Mgi-Mir-34  Mml-Mir-34-P2b  Mmr-Mir-34-P2b  Mmu-Mir-34-P2b  Mom-Mir-34  Mun-Mir-34-P2b  Npo-Mir-34  Oan-Mir-34-P2b  Obi-Mir-34  Ocu-Mir-34-P2b  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P2b  Pau-Mir-34  Pbv-Mir-34-P2b  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P2b  Rph-Mir-34  Sha-Mir-34-P2b  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P2b  Spu-Mir-34  Sto-Mir-34-P2b  Tca-Mir-34  Tgu-Mir-34-P2b  Tur-Mir-34  War-Mir-34  Xtr-Mir-34-P2b2 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030736.1: 77161920-77161974 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAUGGAGGAUAUUAUCAGUCUAGUUACCAGGCAGUGUAAUUAGAUGAUUUGAUUUAAUAUCAAUCACUAACUACACAGCUAGGUUAAGAGGACUAAAAUGCAUCAAUGGAACC
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Structure
        10         20         30        40        50        
AAGAUGGAGGAUAUUAUC-     AGUU-|  A   A     A    A     U  UUU 
                   AGUCU     ACC GGC GUGUA UUAG UGAUU GA   \
                   UCAGG     UGG UCG CACAU AAUC ACUAA CU   A
CCAAGGUAACUACGUAAAA     AGAAU^  A   A     C    -     -  AUA 
   110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-34-P2b2a_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUAAUUAGAUGAUUUGA -24
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Star sequence

Xla-Mir-34-P2b2a_3p*
mirBase accessionNone
Sequence 
33- AAUCACUAACUACACAGCUAGG -55
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