MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-34-P2b

Family name MIR-34 (all species)
Seed GGCAGUG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-34-P1  Cja-Mir-34-P2a  Cja-Mir-34-P3a-v1  Cja-Mir-34-P3a-v2  Cja-Mir-34-P3b  Cja-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P2b  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P2b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2b  Cin-Mir-34  Cli-Mir-34-P2b  Cmi-Mir-34-P2b  Cpi-Mir-34-P2b  Cpo-Mir-34-P2b  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2b  Dpu-Mir-34  Dre-Mir-34-P2b  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2b  Eca-Mir-34-P2b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2b  Gga-Mir-34-P2b  Gja-Mir-34-P2b  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P2b  Isc-Mir-34  Laf-Mir-34-P2b  Lch-Mir-34-P2b  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P2b  Mdo-Mir-34-P2b  Mgi-Mir-34  Mml-Mir-34-P2b  Mmr-Mir-34-P2b  Mmu-Mir-34-P2b  Mom-Mir-34  Mun-Mir-34-P2b  Npo-Mir-34  Oan-Mir-34-P2b  Obi-Mir-34  Ocu-Mir-34-P2b  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P2b  Pau-Mir-34  Pbv-Mir-34-P2b  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P2b  Rph-Mir-34  Sha-Mir-34-P2b  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P2b  Spu-Mir-34  Sto-Mir-34-P2b  Tca-Mir-34  Tgu-Mir-34-P2b  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P2b1a  Xla-Mir-34-P2b1b  Xla-Mir-34-P2b2a  Xla-Mir-34-P2b2b  Xtr-Mir-34-P2b1  Xtr-Mir-34-P2b2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021925.1: 8988653-8988707 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAAUUUUUUUUCUAUGAGUCUAGUUACUAGGCAGUGUAGUUAGCUGAUUGCUAAUAGUACCAAUCACUAACCACACGGCCAGGUAAAAAGAUUUGGGAAUUCAUCCAAAUGAG
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Structure
        10          20        30        40        50       
UGCAAUUUUUUUUCUAU--|     AG     A   A    A     C      CUAA 
                   GAGUCU  UUACU GGC GUGU GUUAG UGAUUG    U
                   UUUAGA  AAUGG CCG CACA CAAUC ACUAAC    A
GAGUAAACCUACUUAAGGG^     AA     A   G    C     -      CAUG 
   110       100        90        80        70         60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Mature sequence

Cja-Mir-34-P2b_5p (predicted)
mirBase accessionNone
Sequence 
0- AGGCAGUGUAGUUAGCUGAUUGC -23
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Star sequence

Cja-Mir-34-P2b_3p* (predicted)
mirBase accessionNone
Sequence 
33- AAUCACUAACCACACGGCCAGG -55
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