Mir-34-P2b

MirGeneDB ID

Bta-Mir-34-P2b

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-34c

Paralogues

Bta-Mir-34-P1 Bta-Mir-34-P2a Bta-Mir-34-P3a Bta-Mir-34-P3b Bta-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P2b Ami-Mir-34-P2b Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2b Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P2b Cmi-Mir-34-P2b Cpi-Mir-34-P2b Cpo-Mir-34-P2b Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2b Dpu-Mir-34 Dre-Mir-34-P2b Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2b Gga-Mir-34-P2b Gja-Mir-34-P2b Hsa-Mir-34-P2b Isc-Mir-34 Lch-Mir-34-P2b Lgi-Mir-34 Loc-Mir-34-P2b Mdo-Mir-34-P2b Mml-Mir-34-P2b Mmu-Mir-34-P2b Mun-Mir-34-P2b Npo-Mir-34 Oan-Mir-34-P2b Obi-Mir-34 Ocu-Mir-34-P2b Ovu-Mir-34 Pbv-Mir-34-P2b Pfl-Mir-34 Pmi-Mir-34 Rno-Mir-34-P2b Sha-Mir-34-P2b Sko-Mir-34 Spt-Mir-34-P2b Spu-Mir-34 Sto-Mir-34-P2b Tca-Mir-34 Tgu-Mir-34-P2b Xbo-Mir-34 Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037342.1: 21817441-21817495 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2b)

Mir-34-P2a NC_037342.1: 21816741-21816799 [+] UCSC Ensembl
Mir-34-P2b NC_037342.1: 21817441-21817495 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUAAACCUUUUUCCUGUGAGUCUAGUUACUAGGCAGUGUAGUUAGCUGAUUGCUAAUAAUACCAAUCACUAACCACACGGCCAGGUAAAAAGAUUUGGGAAUUCAUCCAAAUGAG

Get precursor sequence

Structure

        10          20        30        40        50       
GUAAACCUUUUUCCUGU--|     AG     A   A    A     C      CUAA 
                   GAGUCU  UUACU GGC GUGU GUUAG UGAUUG    U
                   UUUAGA  AAUGG CCG CACA CAAUC ACUAAC    A
GAGUAAACCUACUUAAGGG^     AA     A   G    C     -      CAUA 
   110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-34-P2b_5p

mirBase accession

MIMAT0003854

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGC -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-34c

Star sequence

Bta-Mir-34-P2b_3p*

mirBase accession

None

Sequence

33- AAUCACUAACCACACGGCCAGG -55

Get sequence