Mir-34-P2b

MirGeneDB ID

Dre-Mir-34-P2b

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-34c

Paralogues

Dre-Mir-34-P1 Dre-Mir-34-P2a

Orthologues

Aae-Mir-34 Aca-Mir-34-P2b Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2b Cin-Mir-34 Cja-Mir-34-P2b Cli-Mir-34-P2b Cmi-Mir-34-P2b Cpi-Mir-34-P2b Cpo-Mir-34-P2b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2b Eca-Mir-34-P2b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2b Gga-Mir-34-P2b Gja-Mir-34-P2b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2b Isc-Mir-34 Laf-Mir-34-P2b Lch-Mir-34-P2b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2b Mdo-Mir-34-P2b Mgi-Mir-34 Mml-Mir-34-P2b Mmr-Mir-34-P2b Mmu-Mir-34-P2b Mom-Mir-34 Mun-Mir-34-P2b Npo-Mir-34 Oan-Mir-34-P2b Obi-Mir-34 Ocu-Mir-34-P2b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2b Pau-Mir-34 Pbv-Mir-34-P2b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2b Rph-Mir-34 Sha-Mir-34-P2b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2b Spu-Mir-34 Sto-Mir-34-P2b Tca-Mir-34 Tgu-Mir-34-P2b Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr5: 57922296-57922352 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2b)

Mir-34-P2b chr5: 57922296-57922352 [-] UCSC Ensembl
Mir-34-P2a chr5: 57922533-57922591 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACCCUAUCGGAUUAUGCUGUGUGGUCACCAGGCAGUGCAGUUAGUUGAUUACAAUCCAUAAAGUAAUCACUAACCUCACUACCAGGUGAAGGCUAGUAACAAAACAACAUACACAC

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Structure

        10           20        30        40        50        
GACCCUAUCGGAUUAUG---|  U  GG     A  C    CA      U      AAUC 
                    CUG GU  UCACC GG AGUG  GUUAGU GAUUAC    C
                    GAU CG  AGUGG CC UCAC  CAAUCA CUAAUG    A
CACACAUACAACAAAACAAU^  -  GA     A  A    UC      -      AAAU 
     110       100         90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-34-P2b_5p

mirBase accession

MIMAT0003759

Sequence

0- AGGCAGUGCAGUUAGUUGAUUAC -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-34c

Star sequence

Dre-Mir-34-P2b_3p*

mirBase accession

MIMAT0032011

Sequence

35- AAUCACUAACCUCACUACCAGG -57

Get sequence