MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-34-P2b

Family name MIR-34 (all species)
Seed GGCAGUG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-34c
Paralogues Dre-Mir-34-P1  Dre-Mir-34-P2a 
Orthologues Aae-Mir-34  Aca-Mir-34-P2b  Ami-Mir-34-P2b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2b  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P2b  Cmi-Mir-34-P2b  Cpi-Mir-34-P2b  Cpo-Mir-34-P2b  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2b  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2b  Gga-Mir-34-P2b  Gja-Mir-34-P2b  Hsa-Mir-34-P2b  Isc-Mir-34  Lch-Mir-34-P2b  Lgi-Mir-34  Loc-Mir-34-P2b  Mdo-Mir-34-P2b  Mml-Mir-34-P2b  Mmu-Mir-34-P2b  Mun-Mir-34-P2b  Npo-Mir-34  Oan-Mir-34-P2b  Obi-Mir-34  Ocu-Mir-34-P2b  Ovu-Mir-34  Pbv-Mir-34-P2b  Pfl-Mir-34  Pmi-Mir-34  Rno-Mir-34-P2b  Sha-Mir-34-P2b  Sko-Mir-34  Spt-Mir-34-P2b  Spu-Mir-34  Sto-Mir-34-P2b  Tca-Mir-34  Tgu-Mir-34-P2b  Xbo-Mir-34  Xla-Mir-34-P2b1a  Xla-Mir-34-P2b1b  Xla-Mir-34-P2b2a  Xla-Mir-34-P2b2b  Xtr-Mir-34-P2b1  Xtr-Mir-34-P2b2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr5: 57922296-57922352 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P2b)		 Mir-34-P2b chr5: 57922296-57922352 [-] UCSC Ensembl
Mir-34-P2a chr5: 57922533-57922591 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACCCUAUCGGAUUAUGCUGUGUGGUCACCAGGCAGUGCAGUUAGUUGAUUACAAUCCAUAAAGUAAUCACUAACCUCACUACCAGGUGAAGGCUAGUAACAAAACAACAUACACAC
Get precursor sequence
Structure
        10           20        30        40        50        
GACCCUAUCGGAUUAUG---|  U  GG     A  C    CA      U      AAUC 
                    CUG GU  UCACC GG AGUG  GUUAGU GAUUAC    C
                    GAU CG  AGUGG CC UCAC  CAAUCA CUAAUG    A
CACACAUACAACAAAACAAU^  -  GA     A  A    UC      -      AAAU 
     110       100         90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-34-P2b_5p
mirBase accessionMIMAT0003759
Sequence 
0- AGGCAGUGCAGUUAGUUGAUUAC -23
Get sequence
Proposed targets TargetScanFish: dre-miR-34c
Star sequence

Dre-Mir-34-P2b_3p*
mirBase accessionMIMAT0032011
Sequence 
35- AAUCACUAACCUCACUACCAGG -57
Get sequence