MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-34-P3a-v2

Family name MIR-34 (all species)
Seed AGGCAGU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-34-P1  Cja-Mir-34-P2a  Cja-Mir-34-P2b  Cja-Mir-34-P3a-v1  Cja-Mir-34-P3b  Cja-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Eca-Mir-34-P3a  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3a-v1  Hsa-Mir-34-P3a-v2  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3a  Mgi-Mir-34  Mmr-Mir-34-P3a  Mmu-Mir-34-P3a  Mom-Mir-34  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3a  Pau-Mir-34  Pbv-Mir-34-P3a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3a  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021916.1: 151489641-151489700 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCAAAGGAUAAAGCUGGGAUGUGUCAGGUAGGCAGUGUAUUGCUAGCGGCUGUUAAUAAUUUUAACAGUUGCUGGUUGCACUCCCUUCUGUUGCAUUCAGAGAAGCACGCCCCCCAAA
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Structure
        10          20        30        40        50        60 
CAGCAAAGGAUAAAGCUG--|      U    U   C      UU           UUAAUA 
                    GGAUGUG CAGG AGG AGUGUA  GCUAGCGGCUG      \
                    CUUACGU GUCU UCC UCACGU  UGGUCGUUGAC      A
AAACCCCCCGCACGAAGAGA^      U    -   C      --           AAUUUU 
.       110       100        90         80          70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Mature sequence

Cja-Mir-34-P3a-v2_5p
mirBase accessionNone
Sequence 
0- UAGGCAGUGUAUUGCUAGCGGCUG -24
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Star sequence

Cja-Mir-34-P3a-v2_3p* (predicted)
mirBase accessionNone
Sequence 
39- GUUGCUGGUUGCACUCCCUUC -60
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