MirGeneDB 2.1
MirGeneDB ID

Lch-Mir-34-P2a

Family name MIR-34 (all species)
Seed GGCAGUG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-34-P1  Lch-Mir-34-P2b  Lch-Mir-34-P3a  Lch-Mir-34-P3b  Lch-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P2a  Ami-Mir-34-P2a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2a  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2a  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P2a  Cmi-Mir-34-P2a  Cpi-Mir-34-P2a  Cpo-Mir-34-P2a  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2a  Dpu-Mir-34  Dre-Mir-34-P2a  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2a  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2a  Gga-Mir-34-P2a  Gja-Mir-34-P2a  Hsa-Mir-34-P2a  Isc-Mir-34  Lgi-Mir-34  Loc-Mir-34-P2a  Mdo-Mir-34-P2a  Mml-Mir-34-P2a  Mmu-Mir-34-P2a  Mun-Mir-34-P2a  Npo-Mir-34  Oan-Mir-34-P2a  Obi-Mir-34  Ocu-Mir-34-P2a  Ovu-Mir-34  Pbv-Mir-34-P2a  Pfl-Mir-34  Pmi-Mir-34  Rno-Mir-34-P2a  Sha-Mir-34-P2a  Sko-Mir-34  Spt-Mir-34-P2a  Spu-Mir-34  Sto-Mir-34-P2a  Tca-Mir-34  Tgu-Mir-34-P2a  Xbo-Mir-34  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH126571.1: 4888443-4888502 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCUUCUGAAGGACUUGUGCUUAGUUUGUAGGCAGUGUAGUUAGCUGAUUGUGUCCCUGCAGUCUGCAAUCACUAACCACACUACCAUCAAAACAAGGCGCAUUCACACCGGGAAUCGC
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Structure
        10         20        30         40        50          
UUUCUUCUGAAGGACUU-      A    GUA-| C     A     C       GUCCCU 
                  GUGCUU GUUU    GG AGUGU GUUAG UGAUUGU      \
                  CGCGGA CAAA    CC UCACA CAAUC ACUAACG      G
CGCUAAGGGCCACACUUA      A    ACUA^ A     C     -       UCUGAC 
.       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Mature sequence

Lch-Mir-34-P2a_5p (predicted)
mirBase accessionNone
Sequence 
0- AGGCAGUGUAGUUAGCUGAUUGU -23
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Star sequence

Lch-Mir-34-P2a_3p* (predicted)
mirBase accessionNone
Sequence 
38- AAUCACUAACCACACUACCAUC -60
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