Mir-34-P1

MirGeneDB ID

Eca-Mir-34-P1

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-34a

Paralogues

Eca-Mir-34-P2a Eca-Mir-34-P2b Eca-Mir-34-P3b Eca-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P1 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P1 Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P1 Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P1 Cin-Mir-34 Cja-Mir-34-P1 Cli-Mir-34-P1 Cmi-Mir-34-P1 Cpi-Mir-34-P1 Cpo-Mir-34-P1 Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P1 Dpu-Mir-34 Dre-Mir-34-P1 Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P1 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P1 Gga-Mir-34-P1 Gja-Mir-34-P1 Gmo-Mir-34-P1 Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P1 Isc-Mir-34 Laf-Mir-34-P1 Lch-Mir-34-P1 Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P1 Mal-Mir-34-P1 Mdo-Mir-34-P1 Mgi-Mir-34 Mml-Mir-34-P1 Mmr-Mir-34-P1 Mmu-Mir-34-P1 Mom-Mir-34 Mun-Mir-34-P1 Neu-Mir-34-P1 Npo-Mir-34 Oan-Mir-34-P1 Obi-Mir-34 Ocu-Mir-34-P1 Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P1 Pau-Mir-34 Pbv-Mir-34-P1 Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P1 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P1 Rph-Mir-34 Sha-Mir-34-P1 Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P1 Spu-Mir-34 Sto-Mir-34-P1 Tca-Mir-34 Tgu-Mir-34-P1 Tni-Mir-34-P1 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P1a Xla-Mir-34-P1b Xtr-Mir-34-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009149.1: 42156753-42156818 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACGGACAGGGCCAGCUGUGCGUGUUUCUUUGGCAGUGUCUUAGCUGGUUGUUGUGAGUAAUAGUGCGGGAAGCAAUCAGCAAGUAUACUGCCUUAGAACUGCUGCACGUUGUGGGGCCCGAGAGG

Get precursor sequence

Structure

        10         20         30         40        50        60  
CACGGACAGGGCCAGCU-    -  GU    UU        -|  A          GUGAGUAA 
                  GUGC GU  UUCU  GGCAGUGU CUU GCUGGUUGUU        U
                  CACG CG  AAGA  CCGUCAUA GAA CGACUAACGA        A
GGAGAGCCCGGGGUGUUG    U  UC    UU        U^  -          AGGGCGUG 
    120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-34-P1_5p

mirBase accession

MIMAT0012917

Sequence

0- UGGCAGUGUCUUAGCUGGUUGUU -23

Get sequence

Star sequence

Eca-Mir-34-P1_3p* (predicted)

mirBase accession

None

Sequence

43- CAAUCAGCAAGUAUACUGCCUUA -66

Get sequence