MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-34-P1

Family name MIR-34 (all species)
Seed GGCAGUG
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-34-P2a  Loc-Mir-34-P2b  Loc-Mir-34-P3a  Loc-Mir-34-P3b  Loc-Mir-34-P3c  Loc-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P1  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P1  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P1  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P1  Cin-Mir-34  Cja-Mir-34-P1  Cli-Mir-34-P1  Cmi-Mir-34-P1  Cpi-Mir-34-P1  Cpo-Mir-34-P1  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P1  Dpu-Mir-34  Dre-Mir-34-P1  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P1  Eca-Mir-34-P1  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P1  Gga-Mir-34-P1  Gja-Mir-34-P1  Gmo-Mir-34-P1  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P1  Isc-Mir-34  Laf-Mir-34-P1  Lch-Mir-34-P1  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mal-Mir-34-P1  Mdo-Mir-34-P1  Mgi-Mir-34  Mml-Mir-34-P1  Mmr-Mir-34-P1  Mmu-Mir-34-P1  Mom-Mir-34  Mun-Mir-34-P1  Neu-Mir-34-P1  Npo-Mir-34  Oan-Mir-34-P1  Obi-Mir-34  Ocu-Mir-34-P1  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P1  Pau-Mir-34  Pbv-Mir-34-P1  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P1  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P1  Rph-Mir-34  Sha-Mir-34-P1  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P1  Spu-Mir-34  Sto-Mir-34-P1  Tca-Mir-34  Tgu-Mir-34-P1  Tni-Mir-34-P1  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P1a  Xla-Mir-34-P1b  Xtr-Mir-34-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG25: 12872249-12872313 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGGGCCCUGGGCAUUUGUGGGCGCUUCUUUGGCAGUGUCUUAGCUGGUUGUUGUGAGGAGUCUGAACGAAGCAAUCAGCAAGUAUACUGCCGCAGAAACGCCUCACCAUGCGUGCCACACAAGG
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Structure
        10         20         30         40        50        60  
AAGGGCCCUGGGCAUUU-   -    C    U         -|  A          GUGAGGAG 
                  GUG GGCG UUCU UGGCAGUGU CUU GCUGGUUGUU        \
                  CAC CCGC AAGA GCCGUCAUA GAA CGACUAACGA        U
GGAACACACCGUGCGUAC   U    A    C         U^  -          AGCAAGUC 
   120       110       100        90         80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-34-P1_5p
mirBase accessionNone
Sequence 
0- UGGCAGUGUCUUAGCUGGUUGUU -23
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Star sequence

Loc-Mir-34-P1_3p*
mirBase accessionNone
Sequence 
42- CAAUCAGCAAGUAUACUGCCGCA -65
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