MirGeneDB 2.1
MirGeneDB ID

Ocu-Mir-34-P1

Family name MIR-34 (all species)
Seed GGCAGUG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-34a
Paralogues Ocu-Mir-34-P2a  Ocu-Mir-34-P2b  Ocu-Mir-34-P3a  Ocu-Mir-34-P3b  Ocu-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P1  Ami-Mir-34-P1  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P1  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P1  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P1  Cmi-Mir-34-P1  Cpi-Mir-34-P1  Cpo-Mir-34-P1  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P1  Dpu-Mir-34  Dre-Mir-34-P1  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P1  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P1  Gga-Mir-34-P1  Gja-Mir-34-P1  Gmo-Mir-34-P1  Hsa-Mir-34-P1  Isc-Mir-34  Lch-Mir-34-P1  Lgi-Mir-34  Loc-Mir-34-P1  Mal-Mir-34-P1  Mdo-Mir-34-P1  Mml-Mir-34-P1  Mmu-Mir-34-P1  Mun-Mir-34-P1  Npo-Mir-34  Oan-Mir-34-P1  Obi-Mir-34  Ovu-Mir-34  Pbv-Mir-34-P1  Pfl-Mir-34  Pma-Mir-34-P1  Pmi-Mir-34  Rno-Mir-34-P1  Sha-Mir-34-P1  Sko-Mir-34  Spt-Mir-34-P1  Spu-Mir-34  Sto-Mir-34-P1  Tca-Mir-34  Tgu-Mir-34-P1  Tni-Mir-34-P1  Xbo-Mir-34  Xla-Mir-34-P1a  Xla-Mir-34-P1b  Xtr-Mir-34-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(oryCun2_add)		 chr13: 140941487-140941552 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGGGAGGGGCCGGCUGUGAGUGUUUCUUUGGCAGUGUCUUAGCUGGUUGUUGUGAGUCACAGAGAAGGAAGCAAUCAGCAAGUAUACUGCCCUAGAAGUGCUGCACGUUGUGGGGCCCAGGACG
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Structure
        10         20         30         40        50        60  
CCAGGGAGGGGCCGGCU-   -  UG     UU        -|  A          GUGAGUCA 
                  GUG AG  UUUCU  GGCAGUGU CUU GCUGGUUGUU        C
                  CAC UC  GAAGA  CCGUCAUA GAA CGACUAACGA        A
GCAGGACCCGGGGUGUUG   G  GU     UC        U^  -          AGGAAGAG 
    120       110       100        90         80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-34-P1_5p
mirBase accessionMIMAT0048167
Sequence 
0- UGGCAGUGUCUUAGCUGGUUGUU -23
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Star sequence

Ocu-Mir-34-P1_3p*
mirBase accessionMIMAT0048168
Sequence 
43- CAAUCAGCAAGUAUACUGCCCUA -66
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