MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-34-P1

Family name MIR-34 (all species)
Seed GGCAGUG
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-34-P2a  Cmi-Mir-34-P2b  Cmi-Mir-34-P3a  Cmi-Mir-34-P3b  Cmi-Mir-34-P3c  Cmi-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P1  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P1  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P1  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P1  Cin-Mir-34  Cja-Mir-34-P1  Cli-Mir-34-P1  Cpi-Mir-34-P1  Cpo-Mir-34-P1  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P1  Dpu-Mir-34  Dre-Mir-34-P1  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P1  Eca-Mir-34-P1  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P1  Gga-Mir-34-P1  Gja-Mir-34-P1  Gmo-Mir-34-P1  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P1  Isc-Mir-34  Laf-Mir-34-P1  Lch-Mir-34-P1  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P1  Mal-Mir-34-P1  Mdo-Mir-34-P1  Mgi-Mir-34  Mml-Mir-34-P1  Mmr-Mir-34-P1  Mmu-Mir-34-P1  Mom-Mir-34  Mun-Mir-34-P1  Neu-Mir-34-P1  Npo-Mir-34  Oan-Mir-34-P1  Obi-Mir-34  Ocu-Mir-34-P1  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P1  Pau-Mir-34  Pbv-Mir-34-P1  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P1  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P1  Rph-Mir-34  Sha-Mir-34-P1  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P1  Spu-Mir-34  Sto-Mir-34-P1  Tca-Mir-34  Tgu-Mir-34-P1  Tni-Mir-34-P1  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P1a  Xla-Mir-34-P1b  Xtr-Mir-34-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635947.1: 488153-488216 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAAGUCCUGGCCACCUGUGUGUGUUUCUCUGGCAGUGUCUUAGCUGGUUGUUGUGUGCAGUCAGAAAAAGCAAUCAGCAAGUAUACUGCCGCAGAAAUGCUGCACCUCAACAGGCCUUGCCUU
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Structure
        10         20         30         40        50        60 
GGAAGUCCUGGCCACCU-    -        C         -|  A          GUGUGCA 
                  GUGU GUGUUUCU UGGCAGUGU CUU GCUGGUUGUU       G
                  CACG CGUAAAGA GCCGUCAUA GAA CGACUAACGA       U
UUCCGUUCCGGACAACUC    U        C         U^  -          AAAAGAC 
  120       110       100        90        80         70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-34-P1_5p
mirBase accessionNone
Sequence 
0- UGGCAGUGUCUUAGCUGGUUGUU -23
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Star sequence

Cmi-Mir-34-P1_3p*
mirBase accessionNone
Sequence 
41- CAAUCAGCAAGUAUACUGCCGCA -64
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