MirGeneDB ID | Cmi-Mir-34-P3d |
Family name |
MIR-34 (all species) |
Seed |
GGCAGUG |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-34-P1
Cmi-Mir-34-P2a
Cmi-Mir-34-P2b
Cmi-Mir-34-P3a
Cmi-Mir-34-P3b
Cmi-Mir-34-P3c
|
Orthologues |
Aae-Mir-34
Aca-Mir-34-P3d
Ami-Mir-34-P3d
Asu-Mir-34
Bge-Mir-34
Cbr-Mir-34
Cel-Mir-34
Cgi-Mir-34
Cin-Mir-34
Cli-Mir-34-P3d
Cpi-Mir-34-P3d
Cte-Mir-34
Dan-Mir-34
Dma-Mir-34
Dme-Mir-34
Dmo-Mir-34
Dpu-Mir-34
Dsi-Mir-34
Dya-Mir-34
Efe-Mir-34
Esc-Mir-34
Gga-Mir-34-P3d
Gja-Mir-34-P3d
Gmo-Mir-34-P3d
Isc-Mir-34
Lch-Mir-34-P3d
Lgi-Mir-34
Loc-Mir-34-P3d
Mal-Mir-34-P3d
Mdo-Mir-34-P3d
Mun-Mir-34-P3d
Npo-Mir-34
Obi-Mir-34
Ovu-Mir-34
Pbv-Mir-34-P3d
Pfl-Mir-34
Pma-Mir-34-P3
Pmi-Mir-34
Sha-Mir-34-P3d
Sko-Mir-34
Spt-Mir-34-P3d
Spu-Mir-34
Sto-Mir-34-P3d
Tca-Mir-34
Tgu-Mir-34-P3d
Xbo-Mir-34
Xla-Mir-34-P3d1
Xla-Mir-34-P3d2
Xtr-Mir-34-P3d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635876.1: 5895211-5895269 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCAGGGUGAUUGGGAGUGUGUGGGUUGAUUAGGCAGUGUAAUGUUAGCUGGCUGCAAUGUAGGAAUCAGCAGCUACAAGCACUACCACAUUAGCUCAUGAUUUCACAACAACAUAAAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCAGGGUGAUUGGGAGUGU--| UA C AA U G GCAAUG
GUGGGUUGAU GG AGUGU UGU AGCUG CU U
UACUCGAUUA CC UCACG ACA UCGAC GA A
AGAAAUACAACAACACUUUAG^ CA A A- - - CUAAGG
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Cmi-Mir-34-P3d_5p |
mirBase accession | None |
Sequence |
0- AGGCAGUGUAAUGUUAGCUGGCU -23
Get sequence
|
Co-mature sequence |
Cmi-Mir-34-P3d_3p |
mirBase accession | None |
Sequence |
38- GCAGCUACAAGCACUACCACA -59
Get sequence
|