MirGeneDB ID | Gja-Mir-34-P3d |
Family name |
MIR-34 (all species) |
Seed |
GGCAGUG |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
Gja-Mir-34-P1
Gja-Mir-34-P2a
Gja-Mir-34-P2b
Gja-Mir-34-P3a
Gja-Mir-34-P3b
Gja-Mir-34-P3c
|
Orthologues |
Aae-Mir-34
Aca-Mir-34-P3d
Ami-Mir-34-P3d
Asu-Mir-34
Bge-Mir-34
Cbr-Mir-34
Cel-Mir-34
Cgi-Mir-34
Cin-Mir-34
Cli-Mir-34-P3d
Cmi-Mir-34-P3d
Cpi-Mir-34-P3d
Cte-Mir-34
Dan-Mir-34
Dma-Mir-34
Dme-Mir-34
Dmo-Mir-34
Dpu-Mir-34
Dsi-Mir-34
Dya-Mir-34
Efe-Mir-34
Esc-Mir-34
Gga-Mir-34-P3d
Gmo-Mir-34-P3d
Isc-Mir-34
Lch-Mir-34-P3d
Lgi-Mir-34
Loc-Mir-34-P3d
Mal-Mir-34-P3d
Mdo-Mir-34-P3d
Mun-Mir-34-P3d
Npo-Mir-34
Obi-Mir-34
Ovu-Mir-34
Pbv-Mir-34-P3d
Pfl-Mir-34
Pma-Mir-34-P3
Pmi-Mir-34
Sha-Mir-34-P3d
Sko-Mir-34
Spt-Mir-34-P3d
Spu-Mir-34
Sto-Mir-34-P3d
Tca-Mir-34
Tgu-Mir-34-P3d
Xbo-Mir-34
Xla-Mir-34-P3d1
Xla-Mir-34-P3d2
Xtr-Mir-34-P3d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015173699.1: 557874-557932 [+]
|
Precursor (pre-Mir +30nt flank) |
GGACCAUCGGUGAUGUCUUGUGGGAUGGUUUGGCAGUGUACUGUUAGUUAGCUGUUAUCCAUAUUCCAGCAACUAAAUACACUUCCACAUUAUCACAUGACUUGGCAUCAGUUAGCUGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGACCAUCGGUGAUGUC--|UG G U C CUG A UUAUC
U UG GAUGGU UGG AGUGUA UUAGUU GCUG C
A AC CUAUUA ACC UCACAU AAUCAA CGAC A
AGUCGAUUGACUACGGUUC^GU A C U A-- - CUUAU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Gja-Mir-34-P3d_5p |
mirBase accession | None |
Sequence |
0- UGGCAGUGUACUGUUAGUUAGCUG -24
Get sequence
|
Star sequence |
Gja-Mir-34-P3d_3p* |
mirBase accession | None |
Sequence |
38- GCAACUAAAUACACUUCCACA -59
Get sequence
|