MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-34-P3d

Family name MIR-34 (all species)
Seed GGCAGUG
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-449d
Paralogues Cpi-Mir-34-P1  Cpi-Mir-34-P2a  Cpi-Mir-34-P2b  Cpi-Mir-34-P3a  Cpi-Mir-34-P3b  Cpi-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P3d  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3d  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cli-Mir-34-P3d  Cmi-Mir-34-P3d  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3d  Gja-Mir-34-P3d  Gmo-Mir-34-P3d  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lch-Mir-34-P3d  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3d  Mal-Mir-34-P3d  Mdo-Mir-34-P3d  Mgi-Mir-34  Mom-Mir-34  Mun-Mir-34-P3d  Neu-Mir-34-P3d  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pbv-Mir-34-P3d  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sha-Mir-34-P3d  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3d  Spu-Mir-34  Sto-Mir-34-P3d  Tca-Mir-34  Tgu-Mir-34-P3d  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3d1  Xla-Mir-34-P3d2  Xtr-Mir-34-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(chrPic1)		 JH584718: 642854-642912 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3d)		 Mir-34-P3a JH584718: 640084-640149 [+] UCSC Ensembl
Mir-34-P3b JH584718: 641059-641119 [+] UCSC Ensembl
Mir-34-P3c JH584718: 641224-641281 [+] UCSC Ensembl
Mir-34-P3d JH584718: 642854-642912 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUAGAACUAGUUUUGUGUAUGUGCUGAUUAGGCAGUGUAUUGUUAGUUAGCUGUUGUUCACAUACCAGCAACUAAAUACGCUUCCACAUUAGCACACGACCUUGCAUCAAUGUUUAGA
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Structure
        10        20          30        40        50        60
AAUAGAACUAGUUUUGUGUA--|        UA  C        GU     A    UUGUU 
                      UGUGCUGAU  GG AGUGUAUU  UAGUU GCUG     C
                      ACACGAUUA  CC UCGCAUAA  AUCAA CGAC     A
AGAUUUGUAACUACGUUCCAGC^        CA  U        --     -    CAUAC 
       110       100        90        80           70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-34-P3d_5p
mirBase accessionMIMAT0037882
Sequence 
0- AGGCAGUGUAUUGUUAGUUAGCUG -24
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Star sequence

Cpi-Mir-34-P3d_3p*
mirBase accessionNone
Sequence 
38- GCAACUAAAUACGCUUCCACA -59
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