MirGeneDB 3.0

MirGeneDB ID

Aga-Mir-988

Family name MIR-988 (all species)
Seed CCCUUGU
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-988
Paralogues
Orthologues Aae-Mir-988  Dan-Mir-988  Dme-Mir-988  Dmo-Mir-988  Dsi-Mir-988  Dya-Mir-988  Gpa-Mir-988  Hme-Mir-988 
Node of Origin (locus) Panorpida
Node of Origin (family) Panorpida
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)
NC_064601.1: 108176073-108176132 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGCUGUGGAGCAUUGGACAUUGCCGGUGUGUGUUUUGUGACAAUGAGAUUUAAUAGUUUAAGUUCAUCCCCUUGUUGCAAACCUCACGCUGGCGGUGUUUCCGACUGACAUCGAUCAAC
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Structure
        10            20        30        40        50        
AGGCUGUGGAGCAUUGG----|             UGU    UG    UGA   UUAAUAG 
                     ACAUUGCCGGUGUG   UUUG  ACAA   GAU       U
                     UGUGGCGGUCGCAC   AAAC  UGUU   CUA       U
CAACUAGCUACAGUCAGCCUU^             UCC    GU    CCC   CUUGAAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ab Ab He He Mi Mi Ov Ov Ov
Star sequence

Aga-Mir-988_5p*

mirBase accessionNone
Sequence
0- GUGUUUUGUGACAAUGAGAU -20
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Mature sequence

Aga-Mir-988_3p

mirBase accessionMIMAT0010104
Sequence
38- CCCCUUGUUGCAAACCUCACGC -60
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