MirGeneDB ID | Aga-Mir-988 |
Family name |
MIR-988 (all species) |
Seed |
CCCUUGU |
Species |
African malaria mosquito (Anopheles gambiae) |
MiRBase ID |
aga-mir-988
|
Paralogues |
|
Orthologues |
Aae-Mir-988
Dan-Mir-988
Dme-Mir-988
Dmo-Mir-988
Dsi-Mir-988
Dya-Mir-988
Gpa-Mir-988
Hme-Mir-988
|
Node of Origin (locus) |
Panorpida
|
Node of Origin (family) |
Panorpida
|
Genome context (GCF_943734735.2_idAnoGambNW_F1_1_genomic) |
NC_064601.1: 108176073-108176132 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGCUGUGGAGCAUUGGACAUUGCCGGUGUGUGUUUUGUGACAAUGAGAUUUAAUAGUUUAAGUUCAUCCCCUUGUUGCAAACCUCACGCUGGCGGUGUUUCCGACUGACAUCGAUCAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGGCUGUGGAGCAUUGG----| UGU UG UGA UUAAUAG
ACAUUGCCGGUGUG UUUG ACAA GAU U
UGUGGCGGUCGCAC AAAC UGUU CUA U
CAACUAGCUACAGUCAGCCUU^ UCC GU CCC CUUGAAU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Ab |
Ab |
He |
He |
Mi |
Mi |
Ov |
Ov |
Ov |
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|
Star sequence |
Aga-Mir-988_5p* |
mirBase accession | None |
Sequence |
0- GUGUUUUGUGACAAUGAGAU -20
Get sequence
|
Mature sequence |
Aga-Mir-988_3p |
mirBase accession | MIMAT0010104 |
Sequence |
38- CCCCUUGUUGCAAACCUCACGC -60
Get sequence
|