| MirGeneDB ID | Aga-Mir-988 |
|---|
| Family name |
MIR-988 (all species) |
|---|
| Seed |
CCCUUGU |
|---|
| Species |
African malaria mosquito (Anopheles gambiae) |
|---|
| MiRBase ID |
aga-mir-988
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aae-Mir-988
Dan-Mir-988
Dme-Mir-988
Dmo-Mir-988
Dsi-Mir-988
Dya-Mir-988
Gpa-Mir-988
Hme-Mir-988
|
|---|
| Node of Origin (locus) |
Panorpida
|
|---|
| Node of Origin (family) |
Panorpida
|
|---|
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic) |
NC_064601.1: 108176073-108176132 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGGCUGUGGAGCAUUGGACAUUGCCGGUGUGUGUUUUGUGACAAUGAGAUUUAAUAGUUUAAGUUCAUCCCCUUGUUGCAAACCUCACGCUGGCGGUGUUUCCGACUGACAUCGAUCAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGGCUGUGGAGCAUUGG----| UGU UG UGA UUAAUAG
ACAUUGCCGGUGUG UUUG ACAA GAU U
UGUGGCGGUCGCAC AAAC UGUU CUA U
CAACUAGCUACAGUCAGCCUU^ UCC GU CCC CUUGAAU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
| |
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| Star sequence |
Aga-Mir-988_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GUGUUUUGUGACAAUGAGAU -20
Get sequence
|
|---|
| Mature sequence |
Aga-Mir-988_3p |
| mirBase accession | MIMAT0010104 |
|---|
| Sequence |
38- CCCCUUGUUGCAAACCUCACGC -60
Get sequence
|
|---|
