MirGeneDB ID | Aae-Mir-988 |
Family name |
MIR-988 (all species) |
Seed |
CCCUUGU |
Species |
Yellow fever mosquito (Aedes aegypti) |
MiRBase ID |
aae-mir-988
|
Paralogues |
|
Orthologues |
Aga-Mir-988
Dan-Mir-988
Dme-Mir-988
Dmo-Mir-988
Dsi-Mir-988
Dya-Mir-988
Gpa-Mir-988
Hme-Mir-988
|
Node of Origin (locus) |
Panorpida
|
Node of Origin (family) |
Panorpida
|
Genome context (Aaeg_L3) |
supercont1.442: 623057-623115 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGACAGGUUUGAUGGAAACCUGCUGCGGGUGUGUGCUUUGUGACAAUGAGAUUCGGUUCGAUAUCAUCCCCUUGUUGCAAACCUCACGCUUGCGGUAGGUUCCACAACUGCUGAGAGGU
Get precursor sequence
|
Structure | 10 20 30 40 50
CGACAGGUUUGAUGGAA--| UGC UG UGA UCGGUU
ACCUGCUGCGGGUGUG UUUG ACAA GAU \
UGGAUGGCGUUCGCAC AAAC UGUU CUA C
UGGAGAGUCGUCAACACCU^ UCC GU CCC CUAUAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Aae-Mir-988_5p* |
mirBase accession | MIMAT0014280 |
Sequence |
0- GUGUGCUUUGUGACAAUGAGAU -22
Get sequence
|
Mature sequence |
Aae-Mir-988_3p |
mirBase accession | MIMAT0014281 |
Sequence |
37- CCCCUUGUUGCAAACCUCACGC -59
Get sequence
|