MirGeneDB 3.0

MirGeneDB ID

Aae-Mir-988

Family name MIR-988 (all species)
Seed CCCUUGU
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-988
Paralogues
Orthologues Aga-Mir-988  Dan-Mir-988  Dme-Mir-988  Dmo-Mir-988  Dsi-Mir-988  Dya-Mir-988  Gpa-Mir-988  Hme-Mir-988 
Node of Origin (locus) Panorpida
Node of Origin (family) Panorpida
Genome context
(Aaeg_L3)
supercont1.442: 623057-623115 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGACAGGUUUGAUGGAAACCUGCUGCGGGUGUGUGCUUUGUGACAAUGAGAUUCGGUUCGAUAUCAUCCCCUUGUUGCAAACCUCACGCUUGCGGUAGGUUCCACAACUGCUGAGAGGU
Get precursor sequence
Structure
        10          20        30        40        50         
CGACAGGUUUGAUGGAA--|               UGC    UG    UGA   UCGGUU 
                   ACCUGCUGCGGGUGUG   UUUG  ACAA   GAU      \
                   UGGAUGGCGUUCGCAC   AAAC  UGUU   CUA      C
UGGAGAGUCGUCAACACCU^               UCC    GU    CCC   CUAUAG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ge Ge So So To To To
Star sequence

Aae-Mir-988_5p*

mirBase accessionMIMAT0014280
Sequence
0- GUGUGCUUUGUGACAAUGAGAU -22
Get sequence
Mature sequence

Aae-Mir-988_3p

mirBase accessionMIMAT0014281
Sequence
37- CCCCUUGUUGCAAACCUCACGC -59
Get sequence