| MirGeneDB ID | Hme-Mir-988 |
|---|
| Family name |
MIR-988 (all species) |
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| Seed |
CCCUUGU |
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| Species |
Longwing butterfly (Heliconius melpomene) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Aae-Mir-988
Aga-Mir-988
Dan-Mir-988
Dme-Mir-988
Dmo-Mir-988
Dsi-Mir-988
Dya-Mir-988
Gpa-Mir-988
|
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| Node of Origin (locus) |
Panorpida
|
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| Node of Origin (family) |
Panorpida
|
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Genome context
(Hmel_1) |
HE672081: 475628-475688 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGAAAGAAGAAAAUAUGCAACUGCCCAUAGUGUGCGUUGUAGCAAAGGAGAUCAAAUGGUUGUACCAUCCCCUUGUUACAAACCUCACUUUGGUUCUUUGCACAAUCCAACAACAACAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGAAAGAAGAAAAUAU--| CUGC U UGCG A A CAAAUG
GCAA CCA AGUG UUGUAGCAA GG GAU G
CGUU GGU UCAC AACAUUGUU CC CUA U
UUACAACAACAACCUAACA^ UCUU U UCCA C - CCAUGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Hme-Mir-988_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GUGUGCGUUGUAGCAAAGGAGAU -23
Get sequence
|
|---|
| Mature sequence |
Hme-Mir-988_3p |
| mirBase accession | None |
|---|
| Sequence |
39- CCCCUUGUUACAAACCUCACUU -61
Get sequence
|
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