| MirGeneDB ID | Bta-Mir-1277 |
|---|
| Family name |
MIR-1277 (all species) |
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| Seed |
AUAUAUA |
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| Species |
Cow (Bos taurus) |
|---|
| MiRBase ID |
bta-mir-1277
|
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| Paralogues |
|
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| Orthologues |
Cfa-Mir-1277
Cpo-Mir-1277
Dno-Mir-1277
Eca-Mir-1277
Hsa-Mir-1277
Laf-Mir-1277
Mml-Mir-1277
Mmr-Mir-1277
Ocu-Mir-1277
Pab-Mir-1277
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037357.1: 2569970-2570027 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AUCCAUUUCUACCUUCUUUAACCUCCCAAAUAUAUAUAUAUAUGUACGUAUGUGUAUAUGAAUGUAUACGUAGAUAUAUAUGUAUUUUUGGUGGGUUUAAUUUUCUUCAUCUGUUACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUCCAUUUCUACCUUCUUU--| UC U G UGUAU
AACC CCAAA AUAUAUAUAUAU UACGUAUG A
UUGG GGUUU UAUGUAUAUAUA AUGCAUAU U
UCAUUGUCUACUUCUUUUAAU^ GU U G GUAAG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Mature sequence |
Bta-Mir-1277_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAUAUAUAUAUAUGUACGUAUG -22
Get sequence
|
|---|
| Star sequence |
Bta-Mir-1277_3p* |
| mirBase accession | MIMAT0024569 |
|---|
| Sequence |
36- UACGUAGAUAUAUAUGUAUUUU -58
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-1277
|
|---|
