MirGeneDB ID | Pab-Mir-1277 |
Family name |
MIR-1277 (all species) |
Seed |
ACGUAGA |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-1277
Cfa-Mir-1277
Cpo-Mir-1277
Dno-Mir-1277
Eca-Mir-1277
Hsa-Mir-1277
Laf-Mir-1277
Mml-Mir-1277
Mmr-Mir-1277
Ocu-Mir-1277
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 124137078-124137135 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAUGCAGUAUCCAUUUCUAACCUCCCAAAUAUAUAUAUAUAUGUACGUAUGUGUAUAUAAAUGUAUACGUAGAUAUAUAUGUAUUUUUGGUGGGUUUAAUUUUUUUCAUCUUUUUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
AAAUGCAGUAUCCAUUUCU--| UC U G UGUAU
AACC CCAAA AUAUAUAUAUAU UACGUAUG A
UUGG GGUUU UAUGUAUAUAUA AUGCAUAU U
CUUUUUUCUACUUUUUUUAAU^ GU U G GUAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Pab-Mir-1277_5p* |
mirBase accession | None |
Sequence |
0- UAUAUAUAUAUAUGUACGUAUG -22
Get sequence
|
Mature sequence |
Pab-Mir-1277_3p |
mirBase accession | None |
Sequence |
36- UACGUAGAUAUAUAUGUAUUUU -58
Get sequence
|