| MirGeneDB ID | Pab-Mir-1277 |
|---|---|
| Family name | MIR-1277 (all species) |
| Seed | ACGUAGA |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1277 Cfa-Mir-1277 Cpo-Mir-1277 Dno-Mir-1277 Eca-Mir-1277 Hsa-Mir-1277 Laf-Mir-1277 Mml-Mir-1277 Mmr-Mir-1277 Ocu-Mir-1277 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 124137078-124137135 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAAUGCAGUAUCCAUUUCUAACCUCCCAAAUAUAUAUAUAUAUGUACGUAUGUGUAUAUAAAUGUAUACGUAGAUAUAUAUGUAUUUUUGGUGGGUUUAAUUUUUUUCAUCUUUUUUCGet precursor sequence |
| Structure | 10 20 30 40 50 AAAUGCAGUAUCCAUUUCU--| UC U G UGUAU AACC CCAAA AUAUAUAUAUAU UACGUAUG A UUGG GGUUU UAUGUAUAUAUA AUGCAUAU U CUUUUUUCUACUUUUUUUAAU^ GU U G GUAAA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UGUG in loop |
| Star sequence | Pab-Mir-1277_5p* |
| mirBase accession | None |
| Sequence |
0- UAUAUAUAUAUAUGUACGUAUG -22
Get sequence
|
| Mature sequence | Pab-Mir-1277_3p |
| mirBase accession | None |
| Sequence |
36- UACGUAGAUAUAUAUGUAUUUU -58
Get sequence
|
