| MirGeneDB ID | Cpo-Mir-1277 |
|---|
| Family name |
MIR-1277 (all species) |
|---|
| Seed |
AUAUAUA |
|---|
| Species |
Guinea pig (Cavia porcellus) |
|---|
| MiRBase ID |
cpo-mir-1277
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-1277
Cfa-Mir-1277
Dno-Mir-1277
Eca-Mir-1277
Hsa-Mir-1277
Laf-Mir-1277
Mml-Mir-1277
Mmr-Mir-1277
Ocu-Mir-1277
Pab-Mir-1277
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(cavPor3) |
scaffold_46: 1242411-1242468 [-]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAGUAUCAAUUUCAACCCUAACUUCCCAAAUAUAUAUAUAUAUGUACGUAUGUGUAUAUAAAUGUAUACGUAGAUAUAUAUGUAUUUUUGGUGAGUUUAAACUUUUCGUCUGUAACUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAGUAUCAAUUUCAACCCU--| UC U G UGUAU
AACU CCAAA AUAUAUAUAUAU UACGUAUG A
UUGA GGUUU UAUGUAUAUAUA AUGCAUAU U
AUCAAUGUCUGCUUUUCAAAU^ GU U G GUAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
|
|
|
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|
|
|
|---|
| Mature sequence |
Cpo-Mir-1277_5p |
| mirBase accession | MIMAT0047413 |
|---|
| Sequence |
0- UAUAUAUAUAUAUGUACGUAUG -22
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-1277_3p* |
| mirBase accession | MIMAT0047414 |
|---|
| Sequence |
36- UACGUAGAUAUAUAUGUAUUUU -58
Get sequence
|
|---|
