MirGeneDB ID | Laf-Mir-1277 |
---|---|
Family name | MIR-1277 (all species) |
Seed | ACGUAGA |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-1277 Cfa-Mir-1277 Cpo-Mir-1277 Dno-Mir-1277 Eca-Mir-1277 Hsa-Mir-1277 Mml-Mir-1277 Mmr-Mir-1277 Ocu-Mir-1277 Pab-Mir-1277 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010059.1: 12577420-12577477 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AAAUGCAGUAUCCAUUUAUAACCUUCCAAAUAUAUAUAUAUAUGUACGUAUGUGUAUAUGAAUGUAUACGUAGAUAUAUAUGUAUUUUUGGUGGGUUUAAUUUUUUUCACCUACGGACGet precursor sequence |
Structure | 10 20 30 40 50 AAAUGCAGUAUCCAUUUAU--| U U G UGUAU AACCU CCAAA AUAUAUAUAUAU UACGUAUG A UUGGG GGUUU UAUGUAUAUAUA AUGCAUAU U CAGGCAUCCACUUUUUUUAAU^ U U G GUAAG 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | UGUG in loop |
Star sequence | Laf-Mir-1277_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UAUAUAUAUAUAUGUACGUAUG -22
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|
Mature sequence | Laf-Mir-1277_3p |
mirBase accession | None |
Sequence |
36- UACGUAGAUAUAUAUGUAUUUU -58
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|