MirGeneDB 3.0

MirGeneDB ID

Laf-Mir-1277

Family name MIR-1277 (all species)
Seed ACGUAGA
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1277  Cfa-Mir-1277  Cpo-Mir-1277  Dno-Mir-1277  Eca-Mir-1277  Hsa-Mir-1277  Mml-Mir-1277  Mmr-Mir-1277  Ocu-Mir-1277  Pab-Mir-1277 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010059.1: 12577420-12577477 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUGCAGUAUCCAUUUAUAACCUUCCAAAUAUAUAUAUAUAUGUACGUAUGUGUAUAUGAAUGUAUACGUAGAUAUAUAUGUAUUUUUGGUGGGUUUAAUUUUUUUCACCUACGGAC
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Structure
        10          20        30        40        50        
AAAUGCAGUAUCCAUUUAU--|    U     U            G        UGUAU 
                     AACCU CCAAA AUAUAUAUAUAU UACGUAUG     A
                     UUGGG GGUUU UAUGUAUAUAUA AUGCAUAU     U
CAGGCAUCCACUUUUUUUAAU^    U     U            G        GUAAG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Wh
Star sequence

Laf-Mir-1277_5p* (predicted)

mirBase accessionNone
Sequence
0- UAUAUAUAUAUAUGUACGUAUG -22
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Mature sequence

Laf-Mir-1277_3p

mirBase accessionNone
Sequence
36- UACGUAGAUAUAUAUGUAUUUU -58
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