MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-1277

Family name MIR-1277 (all species)
Seed AUAUAUA
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1277  Cfa-Mir-1277  Cpo-Mir-1277  Dno-Mir-1277  Hsa-Mir-1277  Laf-Mir-1277  Mml-Mir-1277  Mmr-Mir-1277  Ocu-Mir-1277  Pab-Mir-1277 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)
CM009179.1: 97744099-97744156 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCCAUUUCUACCUUCUCUAACCUCCCAAAUAUAUAUAUAUAUGUACGUAUGUGUAUAUGAAUGUAUACGUAGAUAUAUAUGUAUUUUUGGUGGGUUUAAUUUUUUCAUCUGUUACUG
Get precursor sequence
Structure
        10          20        30        40        50        
AUCCAUUUCUACCUUCUCU--|   UC     U            G        UGUAU 
                     AACC  CCAAA AUAUAUAUAUAU UACGUAUG     A
                     UUGG  GGUUU UAUGUAUAUAUA AUGCAUAU     U
GUCAUUGUCUACUUUUUUAAU^   GU     U            G        GUAAG 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-1277_5p

mirBase accessionNone
Sequence
0- UAUAUAUAUAUAUGUACGUAUG -22
Get sequence
Star sequence

Eca-Mir-1277_3p*

mirBase accessionNone
Sequence
36- UACGUAGAUAUAUAUGUAUUUU -58
Get sequence