MirGeneDB ID | Dno-Mir-1277 |
Family name |
MIR-1277 (all species) |
Seed |
AUAUAUA |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-mir-1277
|
Paralogues |
|
Orthologues |
Bta-Mir-1277
Cfa-Mir-1277
Cpo-Mir-1277
Eca-Mir-1277
Hsa-Mir-1277
Laf-Mir-1277
Mml-Mir-1277
Mmr-Mir-1277
Ocu-Mir-1277
Pab-Mir-1277
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (dasNov3) |
JH568243: 50739-50796 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUCGAUUUCUAUUCUCUCUAACCUCCCAAAUAUAUAUAUAUAUGUACGUAUGUGUAUAUGAGUGUAUACGUAGAUAUAUAUGUAUUUUUGGUGGGUCUAGUUUUUUCAUCUAUUGCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
AUCGAUUUCUAUUCUCU- -| UC U G UGUAU
CUA ACC CCAAA AUAUAUAUAUAU UACGUAUG A
GAU UGG GGUUU UAUGUAUAUAUA AUGCAUAU U
GUCGUUAUCUACUUUUUU C^ GU U G GUGAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Dno-Mir-1277_5p |
mirBase accession | MIMAT0048037 |
Sequence |
0- UAUAUAUAUAUAUGUACGUAUG -22
Get sequence
|
Star sequence |
Dno-Mir-1277_3p* |
mirBase accession | MIMAT0048038 |
Sequence |
36- UACGUAGAUAUAUAUGUAUUUU -58
Get sequence
|