MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-1307

Family name MIR-1307 (all species)
Seed CGACCGG
Species Cow (Bos taurus)
MiRBase ID bta-mir-1307
Paralogues
Orthologues Cfa-Mir-1307  Cja-Mir-1307  Dno-Mir-1307  Eca-Mir-1307  Hsa-Mir-1307  Laf-Mir-1307-v1  Laf-Mir-1307-v2  Mml-Mir-1307  Mmr-Mir-1307-v1  Mmr-Mir-1307-v2  Ocu-Mir-1307  Pab-Mir-1307 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037353.1: 23985877-23985938 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGCUGAGUCACUGCCACUGCCUACCAAUCUCGACCGGACCUCGACCGGCUCGUCUAUAUUGCCAAUCGACUCGGCGUGGCGUCGGUCGUGGUAGAUAGGCGGUCAUACAGACGAGUUUUCA
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Structure
        10          20        30         40        50        60
CGGCUGAGUCACUGCCA--       CCA   U       A-| U  A   GC   UCUAUA 
                   CUGCCUA   AUC CGACCGG  CC CG CCG  UCG      U
                   GGCGGAU   UGG GCUGGCU  GG GC GGC  AGC      U
ACUUUUGAGCAGACAUACU       AGA   U       GC^ U  -   UC   UAACCG 
120       110       100        90        80         70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-1307_5p

mirBase accessionNone
Sequence
0- UCGACCGGACCUCGACCGGCUCG -23
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Star sequence

Bta-Mir-1307_3p*

mirBase accessionMIMAT0009969
Sequence
39- ACUCGGCGUGGCGUCGGUCGUGG -62
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Proposed targets TargetScanVert: bta-miR-1307