| MirGeneDB ID | Eca-Mir-1307 |
|---|
| Family name |
MIR-1307 (all species) |
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| Seed |
CUCGGCG |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-1307
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| Paralogues |
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| Orthologues |
Bta-Mir-1307
Cfa-Mir-1307
Cja-Mir-1307
Dno-Mir-1307
Hsa-Mir-1307
Laf-Mir-1307-v1
Laf-Mir-1307-v2
Mml-Mir-1307
Mmr-Mir-1307-v1
Mmr-Mir-1307-v2
Ocu-Mir-1307
Pab-Mir-1307
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009148.1: 27102445-27102506 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGCUGAGUUACUGCCACUGCCUACCAAUCUCGACCGGACCUCGACCGGCUCGUCUAUGUUGCCAAUCGACUCGGCGUGGCGUCGGUCGUGGUAGAUAGGCGGUCAUACAUACGAAUUUUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAGCUGAGUUACUGCCA-- CCA U A-| U A GC UCUAUG
CUGCCUA AUC CGACCGG CC CG CCG UCG U
GGCGGAU UGG GCUGGCU GG GC GGC AGC U
ACUUUUAAGCAUACAUACU AGA U GC^ U - UC UAACCG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
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| Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
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| Star sequence |
Eca-Mir-1307_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCGACCGGACCUCGACCGGCUCG -23
Get sequence
|
|---|
| Mature sequence |
Eca-Mir-1307_3p |
| mirBase accession | MIMAT0034589 |
|---|
| Sequence |
39- ACUCGGCGUGGCGUCGGUCGUGG -62
Get sequence
|
|---|
