MirGeneDB ID | Cja-Mir-1307 |
---|---|
Family name | MIR-1307 (all species) |
Seed | CUCGGCG |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-1307 Cfa-Mir-1307 Dno-Mir-1307 Eca-Mir-1307 Hsa-Mir-1307 Laf-Mir-1307-v1 Laf-Mir-1307-v2 Mml-Mir-1307 Mmr-Mir-1307-v1 Mmr-Mir-1307-v2 Ocu-Mir-1307 Pab-Mir-1307 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021926.1: 93039966-93040027 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CAGCUGAGUCACUGUCACUGCCUACCAAUCUCGACCGGACCUCGACCGGCUCGUCUCUGUUGCCAAUCGACUCGGCGUGGCGUCGGUCGUGGUAGAUAGGCGGUCAUGCAUACGAAUUUUCAGet precursor sequence |
Structure | 10 20 30 40 50 60 CAGCUGAGUCACUGUCA-- CCA U A-| U A GC UCUCUG CUGCCUA AUC CGACCGG CC CG CCG UCG U GGCGGAU UGG GCUGGCU GG GC GGC AGC U ACUUUUAAGCAUACGUACU AGA U GC^ U - UC UAACCG 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Star sequence | Cja-Mir-1307_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UCGACCGGACCUCGACCGGCUCG -23
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Mature sequence | Cja-Mir-1307_3p |
mirBase accession | None |
Sequence |
39- ACUCGGCGUGGCGUCGGUCGUGG -62
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