| MirGeneDB ID | Pab-Mir-1307 |
|---|---|
| Family name | MIR-1307 (all species) |
| Seed | CUCGGCG |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1307 Cfa-Mir-1307 Cja-Mir-1307 Dno-Mir-1307 Eca-Mir-1307 Hsa-Mir-1307 Laf-Mir-1307-v1 Laf-Mir-1307-v2 Mml-Mir-1307 Mmr-Mir-1307-v1 Mmr-Mir-1307-v2 Ocu-Mir-1307 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054687.2: 110370425-110370486 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAGCUGAGUCACUGUCACUGCCUACCAAUCUCGACCGGACCUCGACCGGCUCGUCUGUGUUGCCAAUCGACUCGGCGUGGCGUCGGUCGUGGUAGAUAGGCGGUCAUGCAUACGAAUUUUCAGet precursor sequence |
| Structure | 10 20 30 40 50 60 CAGCUGAGUCACUGUCA-- CCA U A-| U A GC UCUGUG CUGCCUA AUC CGACCGG CC CG CCG UCG U GGCGGAU UGG GCUGGCU GG GC GGC AGC U ACUUUUAAGCAUACGUACU AGA U GC^ U - UC UAACCG 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | There is a second Dicer cut -1 on the 3p arm. |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Pab-Mir-1307_5p* |
| mirBase accession | None |
| Sequence |
0- UCGACCGGACCUCGACCGGCUCG -23
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|
| Mature sequence | Pab-Mir-1307_3p |
| mirBase accession | None |
| Sequence |
39- ACUCGGCGUGGCGUCGGUCGUGG -62
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|
