Mir-54-P1a

MirGeneDB ID

Cbr-Mir-54-P1a

Family name

MIR-54 (all species)

Seed

ACCCGUA

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-54a

Paralogues

Cbr-Mir-54-P1b-v1 Cbr-Mir-54-P1b-v2 Cbr-Mir-54-P1c Cbr-Mir-54-P2 Cbr-Mir-54-P3

Orthologues

Asu-Mir-54-o1 Cel-Mir-54-P1

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Chromadorea

Genome context
(CB4)

X: 16963777-16963838 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-54-P1a)

Mir-54-P3 X: 16963349-16963415 [-] Ensembl
Mir-54-P2 X: 16963478-16963540 [-] Ensembl
Mir-54-P1b-v1 X: 16963615-16963679 [-] Ensembl
Mir-54-P1b-v2 X: 16963616-16963678 [-] Ensembl
Mir-54-P1a X: 16963777-16963838 [-] Ensembl
Mir-54-P1c X: 16964087-16964152 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UUCUUCAGGACGUCUAAGCCGAUCCUUGGCUGGGAUAUGAGCAAACGUGUACACGAUACUUAUUCCCUGUACCCGUAUUCUCAUAUCUGAGCCAAGGAUCGUCGCAAAAGGCGGUGCUUCCU

Get precursor sequence

Structure

        10          20        30        40        50        60
UUCUUCAGGACGUCUAAGC--|           G         CAA   U     CGAUAC 
                     CGAUCCUUGGCU GGAUAUGAG   ACG GUACA      U
                     GCUAGGAACCGA UCUAUACUC   UGC CAUGU      U
UCCUUCGUGGCGGAAAACGCU^           G         UUA   C     CCCUUA 
120       110       100        90        80        70