Mir-54-P1c

MirGeneDB ID

Cbr-Mir-54-P1c

Family name

MIR-54 (all species)

Seed

ACCCGUA

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-54d

Paralogues

Cbr-Mir-54-P1a Cbr-Mir-54-P1b-v1 Cbr-Mir-54-P1b-v2 Cbr-Mir-54-P2 Cbr-Mir-54-P3

Orthologues

Asu-Mir-54-o1 Cel-Mir-54-P1

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Chromadorea

Genome context
(CB4)

X: 16964087-16964152 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-54-P1c)

Mir-54-P3 X: 16963349-16963415 [-] Ensembl
Mir-54-P2 X: 16963478-16963540 [-] Ensembl
Mir-54-P1b-v1 X: 16963615-16963679 [-] Ensembl
Mir-54-P1b-v2 X: 16963616-16963678 [-] Ensembl
Mir-54-P1a X: 16963777-16963838 [-] Ensembl
Mir-54-P1c X: 16964087-16964152 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUUCUAAAGCGCUAGGUGAUCCUUGACUAGGAUAUAAAAAGAACGUGUGUACAUGAAUCCAGUGAAUACUUGUACCCGUAUUUUUAUAUCCGAGCCAAGGAUUGCCGUUGAUCGUUUUCCCCUU

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Structure

        10          20        30        40        50        60    
UUUUUCUAAAGCGCUAG--|UG       A  A           GA   UGU     UGAAUCCA 
                   G  AUCCUUG CU GGAUAUAAAAA  ACG   GUACA        \
                   C  UAGGAAC GA CCUAUAUUUUU  UGC   CAUGU        G
UUCCCCUUUUGCUAGUUGC^GU       C  G           A-   C--     UCAUAAGU 
    120       110       100        90         80          70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Star sequence

Cbr-Mir-54-P1c_5p*

mirBase accession

None

Sequence

0- AGGAUAUAAAAAGAACGUGUGUACA -25

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Mature sequence

Cbr-Mir-54-P1c_3p

mirBase accession

MIMAT0011496

Sequence

44- UACCCGUAUUUUUAUAUCCGAG -66

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