MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-54-P1b-v2

Family name MIR-54 (all species)
Seed GAACCUG
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-54b
Paralogues Cbr-Mir-54-P1a  Cbr-Mir-54-P1b-v1  Cbr-Mir-54-P1c  Cbr-Mir-54-P2  Cbr-Mir-54-P3 
Orthologues Asu-Mir-54-o1  Cel-Mir-54-P1 
Node of Origin (locus) C. briggsae
Node of Origin (family) Chromadorea
Genome context
(CB4)		 X: 16963616-16963678 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-54-P1b-v2)		 Mir-54-P3 X: 16963349-16963415 [-] Ensembl
Mir-54-P2 X: 16963478-16963540 [-] Ensembl
Mir-54-P1b-v1 X: 16963615-16963679 [-] Ensembl
Mir-54-P1b-v2 X: 16963616-16963678 [-] Ensembl
Mir-54-P1a X: 16963777-16963838 [-] Ensembl
Mir-54-P1c X: 16964087-16964152 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGUCAUGAGCACGAGCUGAUCUUUGACUCGAACCUGGACAUCGUUUUGUACACGAAGUCAAGCUGCUGUACCCGUGAUUCCAUGUAUCGAGUCAACGAUCGCCUUUAAAAAUGUGCUUCUU
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Structure
        10          20        30         40        50        60 
AAAGUCAUGAGCACGAGCU--    U         -| C    C    UUUU     CGAAGU 
                     GAUC UUGACUCGA AC UGGA AUCG    GUACA      C
                     CUAG AACUGAGCU UG ACCU UAGU    CAUGU      A
UUCUUCGUGUAAAAAUUUCCG    C         A^ U    -    GCC-     CGUCGA 
 120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Mature sequence

Cbr-Mir-54-P1b-v2_5p
mirBase accessionNone
Sequence 
0- CGAACCUGGACAUCGUUUUGUACA -24
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Star sequence

Cbr-Mir-54-P1b-v2_3p*
mirBase accessionMIMAT0011494
Sequence 
40- UACCCGUGAUUCCAUGUAUCGAG -63
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