Mir-54-P3

MirGeneDB ID

Cbr-Mir-54-P3

Family name

MIR-54 (all species)

Seed

ACCCGUA

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-56

Paralogues

Cbr-Mir-54-P1a Cbr-Mir-54-P1b-v1 Cbr-Mir-54-P1b-v2 Cbr-Mir-54-P1c Cbr-Mir-54-P2

Orthologues

Asu-Mir-54-o3 Cel-Mir-54-P3

Node of Origin (locus)

Caenorhabditis

Node of Origin (family)

Chromadorea

Genome context
(CB4)

X: 16963349-16963415 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-54-P3)

Mir-54-P3 X: 16963349-16963415 [-] Ensembl
Mir-54-P2 X: 16963478-16963540 [-] Ensembl
Mir-54-P1b-v1 X: 16963615-16963679 [-] Ensembl
Mir-54-P1b-v2 X: 16963616-16963678 [-] Ensembl
Mir-54-P1a X: 16963777-16963838 [-] Ensembl
Mir-54-P1c X: 16964087-16964152 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

ACGUUGGAACGGAACAUCAGUUUCUGUUCUCAGGGGAUCCAGUUCCGGUUGUGCCUCAUCUCAAUACCCAGAUGGCACCCGUAUUGCUUCCUCUGAGAAUCGACUGCGUACCGCAUUCAGUCCCAAG

Get precursor sequence

Structure

        10            20        30        40        50        60    
ACGUUGGAACGGAACAU----|    UCU            UC    UC   UU     UCAUCUCA 
                     CAGUU   GUUCUCAGGGGA  CAGU  CGG  GUGCC        A
                     GUCAG   UAAGAGUCUCCU  GUUA  GCC  CACGG        U
GAACCCUGACUUACGCCAUGC^    C--            UC    U-   --     UAGACCCA 
     120       110         100        90         80          70