Mir-54-P2

MirGeneDB ID

Cbr-Mir-54-P2

Family name

MIR-54 (all species)

Seed

ACCCGUA

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-55

Paralogues

Cbr-Mir-54-P1a Cbr-Mir-54-P1b-v1 Cbr-Mir-54-P1b-v2 Cbr-Mir-54-P1c Cbr-Mir-54-P3

Orthologues

Asu-Mir-54-o2 Cel-Mir-54-P2

Node of Origin (locus)

Caenorhabditis

Node of Origin (family)

Chromadorea

Genome context
(CB4)

X: 16963478-16963540 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-54-P2)

Mir-54-P3 X: 16963349-16963415 [-] Ensembl
Mir-54-P2 X: 16963478-16963540 [-] Ensembl
Mir-54-P1b-v1 X: 16963615-16963679 [-] Ensembl
Mir-54-P1b-v2 X: 16963616-16963678 [-] Ensembl
Mir-54-P1a X: 16963777-16963838 [-] Ensembl
Mir-54-P1c X: 16964087-16964152 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GCCAAAAUUGAAUCGUCACAAAGGGGGACUCGGCGGAAAAUAUGGUGGUAUACUACACAGUGAAUAGAUAUACCCGUAUAUUUUUCUGCCGAGCCCCUCCACGACAUCAAUAAGGCCGACACG

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Structure

        10        20           30        40         50        60
GCCAAAAUUGAAUCGUCACAAA---|    A            -    GU      CUACACA 
                         GGGGG CUCGGCGGAAAA UAUG  GGUAUA       G
                         UCCCC GAGCCGUCUUUU AUAU  CCAUAU       U
GCACAGCCGGAAUAACUACAGCACC^    -            U    GC      AGAUAAG 
 120       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Star sequence

Cbr-Mir-54-P2_5p*

mirBase accession

None

Sequence

0- CGGCGGAAAAUAUGGUGGUAUA -22

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Mature sequence

Cbr-Mir-54-P2_3p

mirBase accession

MIMAT0001310

Sequence

40- UACCCGUAUAUUUUUCUGCCGAG -63

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