MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-628

Family name MIR-628 (all species)
Seed UGCUGAC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-628
Paralogues
Orthologues Bta-Mir-628  Cja-Mir-628  Dno-Mir-628  Eca-Mir-628  Ete-Mir-628  Hsa-Mir-628  Laf-Mir-628  Mml-Mir-628  Mmr-Mir-628  Ocu-Mir-628  Pab-Mir-628 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chr30: 20769721-20769781 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUCGGAAUAGCUGUUGUGUCACUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAAUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAGGGCUCAUCUGACUUCUGGAAACCUG
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Structure
        10           20        30         40        50         
AUAUCGGAAUAGCUGUU---|U   A      CA  -   A   A           GUAAAA 
                    G GUC CUUCCU  UG CUG CAU UUUACUAGAGG      U
                    C CGG GAAGGG  GC GAC GUG GAAUGAUCUUC      U
GUCCAAAGGUCUUCAGUCUA^U   -      AA  U   G   A           CAAUAA 
 .       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-628_5p
mirBase accessionMIMAT0009921
Sequence 
0- AUGCUGACAUAUUUACUAGAGG -22
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Proposed targets TargetScanVert: cfa-miR-628
miRDB: MIMAT0009921
Star sequence

Cfa-Mir-628_3p*
mirBase accessionNone
Sequence 
38- UCUAGUAAGAGUGGCAGUCGAAG -61
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