| MirGeneDB ID | Laf-Mir-628 |
|---|---|
| Family name | MIR-628 (all species) |
| Seed | UGCUGAC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-628 Cfa-Mir-628 Cja-Mir-628 Dno-Mir-628 Eca-Mir-628 Ete-Mir-628 Hsa-Mir-628 Mml-Mir-628 Mmr-Mir-628 Ocu-Mir-628 Pab-Mir-628 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010086.1: 1491551-1491611 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUGUUGGGAAAGCUGUUGUGUCACUUCCUCAUGCUGACAUGUUUACUAGAGGGUAAAACUGAUAACCGUCUAGUAAGAGUGGCAGUCGAAGGGAAGGGCUCAUCUGACUUCUGGAAACCUGGet precursor sequence |
| Structure | 10 20 30 40 50 CUGUUGGGAAAGCUGUU--- U A CA - A G -| GUAAAA G GUC CUUCCU UG CUG CAU UUUACUAGA GG \ C CGG GAAGGG GC GAC GUG GAAUGAUCU CC C GUCCAAAGGUCUUCAGUCUA U - AA U G A G^ AAUAGU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Laf-Mir-628_5p |
| mirBase accession | None |
| Sequence |
0- AUGCUGACAUGUUUACUAGAGG -22
Get sequence
|
| Co-mature sequence | Laf-Mir-628_3p |
| mirBase accession | None |
| Sequence |
38- UCUAGUAAGAGUGGCAGUCGAAG -61
Get sequence
|
