MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-628

Family name MIR-628 (all species)
Seed UGCUGAC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-628  Cfa-Mir-628  Cja-Mir-628  Dno-Mir-628  Eca-Mir-628  Ete-Mir-628  Hsa-Mir-628  Laf-Mir-628  Mml-Mir-628  Mmr-Mir-628  Ocu-Mir-628 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054695.2: 58385756-58385816 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUCGGAGAUAGCUGUUGUGUCACUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAAUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAGGGCUCAUCUGACUUCUGGAAACCUA
Get precursor sequence
Structure
        10           20        30         40        50         
UAUCGGAGAUAGCUGUU---|U   A      CA  -   A   A           GUAAAA 
                    G GUC CUUCCU  UG CUG CAU UUUACUAGAGG      U
                    C CGG GAAGGG  GC GAC GUG GAAUGAUCUUC      U
AUCCAAAGGUCUUCAGUCUA^U   -      AA  U   G   A           CAAUAA 
 .       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-628_5p

mirBase accessionNone
Sequence
0- AUGCUGACAUAUUUACUAGAGG -22
Get sequence
Star sequence

Pab-Mir-628_3p*

mirBase accessionNone
Sequence
38- UCUAGUAAGAGUGGCAGUCGAAG -61
Get sequence