MirGeneDB ID | Cja-Mir-628 |
Family name |
MIR-628 (all species) |
Seed |
UGCUGAC |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-628
Cfa-Mir-628
Dno-Mir-628
Eca-Mir-628
Ete-Mir-628
Hsa-Mir-628
Laf-Mir-628
Mml-Mir-628
Mmr-Mir-628
Ocu-Mir-628
Pab-Mir-628
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 38936321-38936381 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAUUGGAGAUAGCUAUUGUGUCACUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAGUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAGGGCUCAUCUGACUUCUGGAAUCCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUUGGAGAUAGCUAUU---|U A CA - A A GUAAAG
G GUC CUUCCU UG CUG CAU UUUACUAGAGG U
C CGG GAAGGG GC GAC GUG GAAUGAUCUUC U
GUCCUAAGGUCUUCAGUCUA^U - AA U G A CAAUAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cja-Mir-628_5p |
mirBase accession | None |
Sequence |
0- AUGCUGACAUAUUUACUAGAGG -22
Get sequence
|
Star sequence |
Cja-Mir-628_3p* |
mirBase accession | None |
Sequence |
38- UCUAGUAAGAGUGGCAGUCGAAG -61
Get sequence
|