| MirGeneDB ID | Cja-Mir-628 |
|---|---|
| Family name | MIR-628 (all species) |
| Seed | UGCUGAC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-628 Cfa-Mir-628 Dno-Mir-628 Eca-Mir-628 Ete-Mir-628 Hsa-Mir-628 Laf-Mir-628 Mml-Mir-628 Mmr-Mir-628 Ocu-Mir-628 Pab-Mir-628 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 38936321-38936381 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UAUUGGAGAUAGCUAUUGUGUCACUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAGUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAGGGCUCAUCUGACUUCUGGAAUCCUGGet precursor sequence |
| Structure | 10 20 30 40 50 UAUUGGAGAUAGCUAUU---|U A CA - A A GUAAAG G GUC CUUCCU UG CUG CAU UUUACUAGAGG U C CGG GAAGGG GC GAC GUG GAAUGAUCUUC U GUCCUAAGGUCUUCAGUCUA^U - AA U G A CAAUAA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-628_5p |
| mirBase accession | None |
| Sequence |
0- AUGCUGACAUAUUUACUAGAGG -22
Get sequence
|
| Star sequence | Cja-Mir-628_3p* |
| mirBase accession | None |
| Sequence |
38- UCUAGUAAGAGUGGCAGUCGAAG -61
Get sequence
|
