MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-628

Family name MIR-628 (all species)
Seed UGCUGAC
Species Horse (Equus caballus)
MiRBase ID eca-mir-628a
Paralogues
Orthologues Bta-Mir-628  Cfa-Mir-628  Cja-Mir-628  Dno-Mir-628  Ete-Mir-628  Hsa-Mir-628  Laf-Mir-628  Mml-Mir-628  Mmr-Mir-628  Ocu-Mir-628  Pab-Mir-628 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)
CM009148.1: 136675943-136676003 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUCGGAGAUAGCUGUUGUGUCACUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAAUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAGGGCUCAUCUGACUUCCGGAAACCUG
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Structure
        10           20        30         40        50         
UAUCGGAGAUAGCUGUU---|U   A      CA  -   A   A           GUAAAA 
                    G GUC CUUCCU  UG CUG CAU UUUACUAGAGG      U
                    C CGG GAAGGG  GC GAC GUG GAAUGAUCUUC      U
GUCCAAAGGCCUUCAGUCUA^U   -      AA  U   G   A           CAAUAA 
 .       110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-628_5p

mirBase accessionMIMAT0012903
Sequence
0- AUGCUGACAUAUUUACUAGAGG -22
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Star sequence

Eca-Mir-628_3p*

mirBase accessionNone
Sequence
38- UCUAGUAAGAGUGGCAGUCGAAG -61
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