| MirGeneDB ID | Cja-Mir-149 |
|---|---|
| Family name | MIR-149 (all species) |
| Seed | CUGGCUC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-149 Cfa-Mir-149 Cpo-Mir-149 Dno-Mir-149 Eca-Mir-149 Ete-Mir-149 Hsa-Mir-149 Laf-Mir-149 Mml-Mir-149 Mmr-Mir-149 Mmu-Mir-149 Ocu-Mir-149 Pab-Mir-149 Rno-Mir-149 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021920.1: 158214811-158214872 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGCCCGGGGCUCCCAGGCCGGCGCCCAAGCUCUGGCUCCGUGUCUUCACUCCCGUGUUUGUCCGAGGAGGGAGGGAGGGACGGGGGCUGUGCUGGGGCAGCCGGAACAGCGCAGGUCACCGGGet precursor sequence |
| Structure | 10 20 30 40 50 60 UGCCCGGGGCUCCCAGG- -| A UCU - G A GUGUUUG CCGGC GCCC AGC GGCUCC GU UCUUC CUCCC \ GGCCG CGGG UCG UCGGGG CA GGAGG GAGGG U GGCCACUGGACGCGACAA A^ G UG- G G - AGGAGCC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Mature sequence | Cja-Mir-149_5p |
| mirBase accession | None |
| Sequence |
0- UCUGGCUCCGUGUCUUCACUCCC -23
Get sequence
|
| Star sequence | Cja-Mir-149_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- GAGGGAGGGACGGGGGCUGUGC -62
Get sequence
|
