| MirGeneDB ID | Ocu-Mir-149 |
|---|
| Family name |
MIR-149 (all species) |
|---|
| Seed |
CUGGCUC |
|---|
| Species |
Rabbit (Oryctolagus cuniculus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-149
Cfa-Mir-149
Cja-Mir-149
Cpo-Mir-149
Dno-Mir-149
Eca-Mir-149
Ete-Mir-149
Hsa-Mir-149
Laf-Mir-149
Mml-Mir-149
Mmr-Mir-149
Mmu-Mir-149
Pab-Mir-149
Rno-Mir-149
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(oryCun2_add) |
1995685930: 194-255 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGCCCGGGGCCCUCGGGCCAGCGCCCAGGCUCUGGCUCCGUGUCUUCACUCCCGUGUUUGUCCGAGGAGGGAGGGAGGGACGGGGGCUGUGCUGGGGCCGCUGGAAUAGCACAGGCCGCCGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGCCCGGGGCCCUCGGG- -| A UCU - G A GUGUUUG
CCAGC GCCC GGC GGCUCC GU UCUUC CUCCC \
GGUCG CGGG UCG UCGGGG CA GGAGG GAGGG U
GGCCGCCGGACACGAUAA C^ G UG- G G - AGGAGCC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Not in assembly but in trace archive. |
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| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
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Tissue expression
|
|
|---|
| Mature sequence |
Ocu-Mir-149_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCUGGCUCCGUGUCUUCACUCCC -23
Get sequence
|
|---|
| Star sequence |
Ocu-Mir-149_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- GAGGGAGGGACGGGGGCUGUGC -62
Get sequence
|
|---|
