MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-149

Family name MIR-149 (all species)
Seed CUGGCUC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-149  Cfa-Mir-149  Cja-Mir-149  Cpo-Mir-149  Dno-Mir-149  Eca-Mir-149  Ete-Mir-149  Hsa-Mir-149  Laf-Mir-149  Mml-Mir-149  Mmr-Mir-149  Mmu-Mir-149  Ocu-Mir-149  Rno-Mir-149 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054690.2: 144052849-144052910 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCCGGGGCUCCCAGGCCGGCGCCCGAGCUCUGGCUCCGUGUCUUCACUCCCGUGUUUGUCCAAGGAGGGAGGGAGGGACGGGGGCUGUGCUGGGGCAGCCGGAACAGCGCAGGUCACCGG
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Structure
        10         20         30         40        50        60 
UGCCCGGGGCUCCCAGG-     -|   G   UCU      -  G     A     GUGUUUG 
                  CCGGC GCCC AGC   GGCUCC GU UCUUC CUCCC       \
                  GGCCG CGGG UCG   UCGGGG CA GGAGG GAGGG       U
GGCCACUGGACGCGACAA     A^   G   UG-      G  G     -     AGGAACC 
120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-149_5p

mirBase accessionNone
Sequence
0- UCUGGCUCCGUGUCUUCACUCCC -23
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Star sequence

Pab-Mir-149_3p*

mirBase accessionNone
Sequence
40- GAGGGAGGGACGGGGGCUGUGC -62
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