| MirGeneDB ID | Eca-Mir-149 |
|---|
| Family name |
MIR-149 (all species) |
|---|
| Seed |
CUGGCUC |
|---|
| Species |
Horse (Equus caballus) |
|---|
| MiRBase ID |
eca-mir-149
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-149
Cfa-Mir-149
Cja-Mir-149
Cpo-Mir-149
Dno-Mir-149
Ete-Mir-149
Hsa-Mir-149
Laf-Mir-149
Mml-Mir-149
Mmr-Mir-149
Mmu-Mir-149
Ocu-Mir-149
Pab-Mir-149
Rno-Mir-149
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(GCA_002863925.1_EquCab3.0) |
CM009153.1: 25920892-25920953 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGCCCGGAGCCUCAGGCCGGCGCCCAGGCUCUGGCUCCGUGUCUUCACUCCCGUGUGUGUCCGAGGAGGGAGGGAGGGACGGGGGCUGUGCUGGGGCUGCCGGAACAGCGCAGGUCACCGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUGCCCGGAGCCUCAGG- -| A UCU - G A GUGUGUG
CCGGC GCCC GGC GGCUCC GU UCUUC CUCCC \
GGCCG CGGG UCG UCGGGG CA GGAGG GAGGG U
GGCCACUGGACGCGACAA U^ G UG- G G - AGGAGCC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Eca-Mir-149_5p |
| mirBase accession | MIMAT0012973 |
|---|
| Sequence |
0- UCUGGCUCCGUGUCUUCACUCCC -23
Get sequence
|
|---|
| Star sequence |
Eca-Mir-149_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
40- GAGGGAGGGACGGGGGCUGUGC -62
Get sequence
|
|---|
