MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-149

Family name MIR-149 (all species)
Seed CUGGCUC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-149
Paralogues
Orthologues Bta-Mir-149  Cfa-Mir-149  Cja-Mir-149  Dno-Mir-149  Eca-Mir-149  Ete-Mir-149  Hsa-Mir-149  Laf-Mir-149  Mml-Mir-149  Mmr-Mir-149  Mmu-Mir-149  Ocu-Mir-149  Pab-Mir-149  Rno-Mir-149 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_13: 23532947-23533008 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CCUGCCCGGUCCUCGGGCCGGUGCCCGGGCUCUGGCUCCGUGUCUUCACUCCCGUGUCUGUCCGAGGAGGGAGGGAGGGACGGGGGCUGUGCUGGGGCAGCCGGAAAGGCACAGGUCACCGG
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Structure
        10         20         30         40        50        60 
CCUGCCCGGUCCUCGGG-    -|    G   UCU      -  G     A     GUGUCUG 
                  CCGG UGCCC GGC   GGCUCC GU UCUUC CUCCC       \
                  GGCC ACGGG UCG   UCGGGG CA GGAGG GAGGG       U
GGCCACUGGACACGGAAA    G^    G   UG-      G  G     -     AGGAGCC 
120       110       100        90         80         70
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-149_5p

mirBase accessionMIMAT0047026
Sequence
0- UCUGGCUCCGUGUCUUCACUCCC -23
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Star sequence

Cpo-Mir-149_3p* (predicted)

mirBase accessionMIMAT0047027
Sequence
40- GAGGGAGGGACGGGGGCUGUGC -62
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