| MirGeneDB ID | Cja-Mir-328 |
|---|---|
| Family name | MIR-328 (all species) |
| Seed | UGGCCCU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-328 Cfa-Mir-328 Cpo-Mir-328 Dno-Mir-328 Eca-Mir-328 Ete-Mir-328 Hsa-Mir-328 Laf-Mir-328 Mml-Mir-328 Mmr-Mir-328 Mmu-Mir-328 Ocu-Mir-328 Pab-Mir-328 Rno-Mir-328 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021934.1: 21351817-21351877 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAGUCUUGGGCUGUCUCGGAGCCUGGAGCGGGGGGGCAGGAGGGGCUCAGGGAGAAAGUGCAUGCAGCCCCUGGCCCUCUCUGCCCUUCCGUCCCCUGCUCCUGGCCACACUGUGCCCUGUGet precursor sequence |
| Structure | 10 20 30 40 50 60 AAGUCUUGGGCUGUCUC--| CU AG GA U AGAAAGU GGAGC GG CGGGGGGGCAG GGGGC CAGGG G CCUCG CC GCCUUCCCGUC UCCCG GUCCC C UGUCCCGUGUCACACCGGU^ UC CU UC - CGACGUA . 110 100 90 80 70 |
| Deep sequencing | |
| Comment | Although there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the 3' offset reads in cow in addition to the 3p reads in armadillo where the T is not templated. |
| 3' NTU | Yes |
| Motifs | No |
| Star sequence | Cja-Mir-328_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGGGGGCAGGAGGGGCUCAGGG -22
Get sequence
|
| Mature sequence | Cja-Mir-328_3p |
| mirBase accession | None |
| Sequence |
40- CUGGCCCUCUCUGCCCUUCCG -61
Get sequence
|
