MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-328

Family name MIR-328 (all species)
Seed UGGCCCU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-328
Paralogues
Orthologues Bta-Mir-328  Cfa-Mir-328  Cpo-Mir-328  Dno-Mir-328  Ete-Mir-328  Hsa-Mir-328  Mml-Mir-328  Mmu-Mir-328  Rno-Mir-328 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chr5: 22813812-22813871 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUCCUGGGCUGUCUCAGAACCUGGAGCGGGGGGGCAGGAGGGGCUCAGGGAGAAAAGUGUGCAGCCCCUGGCCCUCUCUGCCCUUCCGUCCCUGUUUCCAGACUCACUGUGCCCAGUC
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Structure
        10           20        30        40        50          
AAGUCCUGGGCUGUCUCA---|   CU  AG           GA     U     AGAAAAG 
                     GAAC  GG  CGGGGGGGCAG  GGGGC CAGGG       \
                     UUUG  CC  GCCUUCCCGUC  UCCCG GUCCC       U
CUGACCCGUGUCACUCAGACC^   U-  CU           UC     -     CGACGUG 
.       110       100         90        80         70
Deep sequencing
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CommentAlthough there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the 3' offset reads in cow in addition to the 3p reads in armadillo where the T is not templated.
3' NTU Yes
MotifsNo
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-328_5p*

mirBase accessionMIMAT0048376
Sequence
0- GGGGGGCAGGAGGGGCUCAGGG -22
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Mature sequence

Ocu-Mir-328_3p

mirBase accessionMIMAT0048377
Sequence
39- CUGGCCCUCUCUGCCCUUCCG -60
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