| MirGeneDB ID | Ocu-Mir-328 |
|---|
| Family name |
MIR-328 (all species) |
|---|
| Seed |
UGGCCCU |
|---|
| Species |
Rabbit (Oryctolagus cuniculus) |
|---|
| MiRBase ID |
ocu-mir-328
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-328
Cfa-Mir-328
Cja-Mir-328
Cpo-Mir-328
Dno-Mir-328
Eca-Mir-328
Ete-Mir-328
Hsa-Mir-328
Laf-Mir-328
Mml-Mir-328
Mmr-Mir-328
Mmu-Mir-328
Pab-Mir-328
Rno-Mir-328
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(oryCun2_add) |
chr5: 22813812-22813871 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGUCCUGGGCUGUCUCAGAACCUGGAGCGGGGGGGCAGGAGGGGCUCAGGGAGAAAAGUGUGCAGCCCCUGGCCCUCUCUGCCCUUCCGUCCCUGUUUCCAGACUCACUGUGCCCAGUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGUCCUGGGCUGUCUCA---| CU AG GA U AGAAAAG
GAAC GG CGGGGGGGCAG GGGGC CAGGG \
UUUG CC GCCUUCCCGUC UCCCG GUCCC U
CUGACCCGUGUCACUCAGACC^ U- CU UC - CGACGUG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Although there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the 3' offset reads in cow in addition to the 3p reads in armadillo where the T is not templated. |
|---|
| 3' NTU |
Yes
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Ocu-Mir-328_5p* |
| mirBase accession | MIMAT0048376 |
|---|
| Sequence |
0- GGGGGGCAGGAGGGGCUCAGGG -22
Get sequence
|
|---|
| Mature sequence |
Ocu-Mir-328_3p |
| mirBase accession | MIMAT0048377 |
|---|
| Sequence |
39- CUGGCCCUCUCUGCCCUUCCG -60
Get sequence
|
|---|
