| MirGeneDB ID | Eca-Mir-328 |
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| Family name |
MIR-328 (all species) |
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| Seed |
UGGCCCU |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-328
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| Paralogues |
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| Orthologues |
Bta-Mir-328
Cfa-Mir-328
Cja-Mir-328
Cpo-Mir-328
Dno-Mir-328
Ete-Mir-328
Hsa-Mir-328
Laf-Mir-328
Mml-Mir-328
Mmr-Mir-328
Mmu-Mir-328
Ocu-Mir-328
Pab-Mir-328
Rno-Mir-328
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009150.1: 18363110-18363170 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGUCCUGGGCUGUUUCGGAGCCUGGAGCGGGGGGGCAGGAGGGGCUCAGGGAGAAAGUGUGUGCAGCCCCUGGCCCUCUCUGCCCUUCCGUCCCCUGUUCCCAGACACAUUGUUCCCAGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAGUCCUGGGCUGUUUC--| CU AG GA U AGAAAGU
GGAGC GG CGGGGGGGCAG GGGGC CAGGG G
CCUUG CC GCCUUCCCGUC UCCCG GUCCC U
UGACCCUUGUUACACAGAC^ UC CU UC - CGACGUG
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | Although there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the 3' offset reads in cow in addition to the 3p reads in armadillo where the T is not templated. |
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| 3' NTU |
Yes
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| Motifs | No |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Star sequence |
Eca-Mir-328_5p* |
| mirBase accession | None |
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| Sequence |
0- GGGGGGCAGGAGGGGCUCAGGG -22
Get sequence
|
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| Mature sequence |
Eca-Mir-328_3p |
| mirBase accession | MIMAT0012929 |
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| Sequence |
40- CUGGCCCUCUCUGCCCUUCCG -61
Get sequence
|
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