| MirGeneDB ID | Ete-Mir-328 |
|---|
| Family name |
MIR-328 (all species) |
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| Seed |
UGGCCCU |
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| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-328
Cfa-Mir-328
Cja-Mir-328
Cpo-Mir-328
Dno-Mir-328
Eca-Mir-328
Hsa-Mir-328
Laf-Mir-328
Mml-Mir-328
Mmr-Mir-328
Mmu-Mir-328
Ocu-Mir-328
Pab-Mir-328
Rno-Mir-328
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(echTel2) |
JH980312: 18343632-18343689 [+]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
GGGCCGUCUCGGAGCCUGAGGCGGAGGGCGGGGAGGCAGUAGGGGCUCAGGGGGAGUGUGUGCAGCCCUGGCCCUCUCUGCCCUUCCGCCCCCCGGCCCCGCCCCGCGCUACCGCUAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGGCCGUCUCGGAGCCU- A -| A GA UA U GGAGUG
G GG CGG GGGCGGG GGCAG GGGGC CAGGG \
C CC GCC CCCGCCU CCGUC UCCCG GUCCC U
CAUCGCCAUCGCGCCCCG C G^ C UC UC - GACGUG
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ete-Mir-328_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GGGAGGCAGUAGGGGCUCAGGG -22
Get sequence
|
|---|
| Mature sequence |
Ete-Mir-328_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- CUGGCCCUCUCUGCCCUUCCG -58
Get sequence
|
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