MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-328

Family name MIR-328 (all species)
Seed UGGCCCU
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-328
Paralogues
Orthologues Bta-Mir-328  Cfa-Mir-328  Cpo-Mir-328  Ete-Mir-328  Hsa-Mir-328  Mml-Mir-328  Mmu-Mir-328  Ocu-Mir-328  Rno-Mir-328 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(dasNov3)
JH568388: 312189-312248 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUCCUGGGCAGUCUCGGAGCCUGGAGCGGGGGGGCAGGAGGGGCUCAGGGAGAAGUGUGUGCAGCCCCUGGCCCUCUCUGCCCUUCCGCCCCCUGUUCCCGGACCCGCCACGCCCAGG
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Structure
        10          20        30        40        50          
AAGUCCUGGGCAGUCUC--|    CU  A            GA     U     AGAAGUG 
                   GGAGC  GG GCGGGGGGGCAG  GGGGC CAGGG       \
                   CCUUG  CC CGCCUUCCCGUC  UCCCG GUCCC       U
GGACCCGCACCGCCCAGGC^    UC  C            UC     -     CGACGUG 
.       110       100        90        80         70
Deep sequencing
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CommentThere are also a significant number of 3p reads that are mono-adenylated at the 3' end.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Dno-Mir-328_5p*

mirBase accessionMIMAT0047807
Sequence
0- GGGGGGCAGGAGGGGCUCAGGG -22
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Mature sequence

Dno-Mir-328_3p

mirBase accessionMIMAT0047808
Sequence
39- CUGGCCCUCUCUGCCCUUCCG -60
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