| MirGeneDB ID | Cja-Mir-346 |
|---|---|
| Family name | MIR-346 (all species) |
| Seed | GUCUGCC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-346 Cfa-Mir-346 Cpo-Mir-346 Eca-Mir-346 Ete-Mir-346 Hsa-Mir-346 Laf-Mir-346 Mml-Mir-346 Mmr-Mir-346 Mmu-Mir-346 Ocu-Mir-346 Pab-Mir-346 Rno-Mir-346 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021926.1: 40264765-40264824 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGCGUGUGGGAGGUCUCUGUGUUGGGCGUCUGUCUGCCCGCAUGCCUGCCUCUCUGUUGCUCUGAAGGAGGCAGGGGCUGGGCCUGCAGCUGCCUGGGCAGAGCGGCUCCUGCGUGGGACGet precursor sequence |
| Structure | 10 20 30 40 50 AGCGUGUGGGAGGUCUC---| G UG U CU - AUG CUGUUG UGU U GGCG CUGU GCCC GC CCUGCCUCU \ ACG G CCGU GACG CGGG CG GGACGGAGG C CAGGGUGCGUCCUCGGCGAG^ - GU C UC U G-- AAGUCU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-346_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGUCUGCCCGCAUGCCUGCCUCU -23
Get sequence
|
| Star sequence | Cja-Mir-346_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- AGGCAGGGGCUGGGCCUGCAGC -60
Get sequence
|
